Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P15
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.27 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.27 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.62 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = +1

Query: 598 PPPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXXKXXXXPPPPPPP 765
           PPP PPP    + K         S      PPP                 PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 690 PPPXXFFXFEXXXKXXXXPPPPPPPXXXGGXPSPXXXCSXXXSXXGXGPPP 842
           PPP               PPPPPPP        P    S   S     PPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
 Frame = +1

Query: 592 PXPPPXPPP-----XSXXKXKXRXF--FXFXXSKXKXGXP--PPPXXFFXLKXXXKXXXX 744
           P PPP PPP      S      R         +      P  PPP               
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310

Query: 745 PPPPPPPXXXGGXXPP 792
           PPPPPPP       PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
 Frame = +1

Query: 601 PPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXX-----KXXXXPPPPPPP 765
           PP PPP S              +K +   PPPP      K             PPPPPP 
Sbjct: 290 PPLPPPSSRVSAAA-----LAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344

Query: 766 XXXGGXXP 789
               G  P
Sbjct: 345 SNAAGSIP 352


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 745 PPPPPPPXXXGGXXPPXXXVP 807
           PPPPPPP    G  PP    P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 745 PPPPPPPXXXGGXXPPXXXVP 807
           PPPPPPP   G   PP    P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +1

Query: 598 PPPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXXKXXXXPPPPPPPXXXG 777
           PPP PP                 +    G PPPP               PPPPPPP    
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP----PGVAGAGPPPPPPPPPAVSA 787

Query: 778 G 780
           G
Sbjct: 788 G 788



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 744 PPPPPPPXXXGGXPSP 791
           PPPPPPP   G  P P
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +3

Query: 717 EXXXKXXXXPPPPPPPXXXGGXPSPXXXCSXXXSXXGXGPPP 842
           E   K     PPPPPP      P+P        +    GPPP
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = +1

Query: 601 PPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXXKXXXXPPPPPPPXXXGG 780
           PP PPP                     G PPPP               PPPPPP    GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 745 PPPPPPPXXXGGXXPPXXXVP 807
           PPPPPP     G  PP    P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 747 PPPPPPXXXGGXPSPXXXCSXXXSXXGXGPPP 842
           P PPP    GG P P           G GPPP
Sbjct: 750 PVPPPAPIMGGPPPP----PPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 744 PPPPPPPXXXGGXPSP 791
           PPPPPPP    G   P
Sbjct: 761 PPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 744 PPPPPPPXXXGGXPSP 791
           PPPPPP     G P P
Sbjct: 763 PPPPPPGVAGAGPPPP 778


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = +1

Query: 586 FPPXPPPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXXKXXXXPPPPPPP 765
           + P PPP PPP    +           S  +   P  P  +   +        PPPPPPP
Sbjct: 187 YNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADP--LPAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 587 FPPXPPPXPPL 619
           FPP PPP PPL
Sbjct: 944 FPPPPPPPPPL 954


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 745 PPPPPPPXXXGGXXPPXXXVP 807
           PPPPPPP       PP    P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/73 (24%), Positives = 19/73 (26%)
 Frame = +1

Query: 589  PPXPPPXPPPXSXXKXKXRXFFXFXXSKXKXGXPPPPXXFFXLKXXXKXXXXPPPPPPPX 768
            P   PP P P                 K     PP P     +    K     PP PPP 
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195

Query: 769  XXGGXXPPXXXVP 807
                   P   VP
Sbjct: 1196 EAPPVPKPSVGVP 1208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,918
Number of Sequences: 5004
Number of extensions: 25199
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)