Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P15
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.87 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 744  PPPPPPPXXXG 776
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 745  PPPPPPPXXXG 777
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 748  PPPPPPXXXGG 780
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 598  PPPXPPPXS 624
            PPP PPP S
Sbjct: 1355 PPPPPPPPS 1363



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 598  PPPXPPPXS 624
            PPP PPP S
Sbjct: 1356 PPPPPPPSS 1364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 589 PPXPPPXPPPXS 624
           PP P P PPP S
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 744 PPPPPPPXXXGGXPS 788
           P PPPPP    G  S
Sbjct: 341 PAPPPPPPSSSGPDS 355


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -1

Query: 839 GGPXPXXXXXXGTXXXGGXXPPXXXGGGGGGG 744
           GGP         T   GG        GGGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,268
Number of Sequences: 438
Number of extensions: 5482
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)