Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P14
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.38 
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    28   2.0  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   2.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   8.1  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.1  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 223 SLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 321
           +L S L      LDD+ K L+L FP++I + RV
Sbjct: 167 ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 PRHSTTMARHIGRITITT-PSVLTFGKACXTHI 223
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +1

Query: 202 ESMXDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 381
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 382 VKAXNGVLMVQAXSAFNHYLKI-QNLPWGCEFRRQ 483
            K  N     ++ +  N   K+ QN+  G   R Q
Sbjct: 163 SKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQ 197


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 166 YHHYDPFSPYVRESMXDTHSLWSNL 240
           + H+DP+S ++  ++ + H  W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 172 HYDPFSPYVRESMXDTHSLWSNLANEMQHLDDMMKELSL 288
           H+D    YV+     T +L  NL ++   L+D  K LSL
Sbjct: 58  HFDTLKIYVKAQQHKTQNLAINLDHDDWILNDGAKTLSL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,716
Number of Sequences: 5004
Number of extensions: 57842
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)