Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P13
         (1050 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    31   0.27 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.47 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   3.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/61 (32%), Positives = 21/61 (34%)
 Frame = +1

Query: 667 PPPPPPXXXGXGSPPPXPXKPXXGXXXXXXXXXXXXAXXRGXGXRXXPPPPPPPPXXXGG 846
           PPPPP       +P P P  P                   G      PPPPPPPP    G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP----GVAGAGPPPPPPPPPAVSAG 788

Query: 847 G 849
           G
Sbjct: 789 G 789



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           PPPPPPP    GA P PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           PPPPPP     G  P PP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           P P PPP    G  P PP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 17/59 (28%), Positives = 18/59 (30%)
 Frame = +1

Query: 655 KXXXPPPPPPXXXGXGSPPPXPXKPXXGXXXXXXXXXXXXAXXRGXGXRXXPPPPPPPP 831
           K   PPPPPP     G PP                     A       +    PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPP 715
           PPPPPP     G+ P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 653 KXXPPPPPPPXXXRGAAP 706
           K  PPPPPP    RG  P
Sbjct: 309 KRPPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
 Frame = +1

Query: 667 PPPPPPXXXGXGSPPPXPXKPXXGXXXXXXXXXXXXAXXRGXGXRXXP---------PPP 819
           PP PPP      SPP  P +P                       R            PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 820 PPPPXXXGGG 849
           PPPP     G
Sbjct: 314 PPPPSRRNRG 323


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           PPPPPPP     + P PP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           PPPPPPP      +  PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 667 PPPPPPXXXGXGSPPPXPXKP 729
           PPPPPP      S PP P  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPPXP 721
           PPPPPP        P PP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +1

Query: 670  PPPPPXXXGXGSPPPXPXKPXXGXXXXXXXXXXXXAXXRGXGXRXX-PPPPPPPPXXXGG 846
            P PPP       PPP P K                      G     PPPPPPPP     
Sbjct: 905  PTPPP-------PPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPPLVSA 957

Query: 847  GGG 855
             GG
Sbjct: 958  AGG 960


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 662 PPPPPPPXXXRGAAPXPP 715
           PPPPPP      AAP PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 673 PPPPXXXGXGSPPP 714
           PPPP   G G+PPP
Sbjct: 129 PPPPAGFGRGAPPP 142


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/55 (25%), Positives = 15/55 (27%)
 Frame = +1

Query: 667 PPPPPPXXXGXGSPPPXPXKPXXGXXXXXXXXXXXXAXXRGXGXRXXPPPPPPPP 831
           PPPPPP             +P                          P PPPPPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808  PPPPPPPP 831
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 808 PPPPPPPP 831
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,202
Number of Sequences: 5004
Number of extensions: 24296
Number of successful extensions: 376
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)