Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P10
         (975 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    34   0.13 
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    34   0.13 
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    25   0.52 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    25   0.53 
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   3.8  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   3.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    29   6.6  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    23   9.0  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 22/85 (25%), Positives = 24/85 (28%)
 Frame = +1

Query: 601 PXCWGVFSIGPPPPLXNHSKKXXPXXXKRVAXXPPPXNYKKSQGXXXXXXXXXXXXXXXX 780
           P   G   I P  PL        P         PPP    +S G                
Sbjct: 578 PPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPP 637

Query: 781 XXXXXALTRXXPXPPXPPPPGXXGG 855
                A+    P PP PPPP   GG
Sbjct: 638 PMGLPAVGAGAPPPPPPPPPSGAGG 662


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 22/85 (25%), Positives = 24/85 (28%)
 Frame = +1

Query: 601 PXCWGVFSIGPPPPLXNHSKKXXPXXXKRVAXXPPPXNYKKSQGXXXXXXXXXXXXXXXX 780
           P   G   I P  PL        P         PPP    +S G                
Sbjct: 404 PPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPP 463

Query: 781 XXXXXALTRXXPXPPXPPPPGXXGG 855
                A+    P PP PPPP   GG
Sbjct: 464 PMGLPAVGAGAPPPPPPPPPSGAGG 488


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 25.4 bits (53), Expect(2) = 0.52
 Identities = 13/63 (20%), Positives = 18/63 (28%)
 Frame = +1

Query: 652 HSKKXXPXXXKRVAXXPPPXNYKKSQGXXXXXXXXXXXXXXXXXXXXXALTRXXPXPPXP 831
           +S+   P    +    PPP  ++  Q                            P PP P
Sbjct: 711 YSRPFRPTSRPKTPPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIPPPPPP 770

Query: 832 PPP 840
           PPP
Sbjct: 771 PPP 773



 Score = 25.4 bits (53), Expect(2) = 0.52
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 814 PXPPXPPPPG 843
           P PP PPPPG
Sbjct: 808 PPPPPPPPPG 817


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 25.4 bits (53), Expect(2) = 0.53
 Identities = 13/63 (20%), Positives = 18/63 (28%)
 Frame = +1

Query: 652 HSKKXXPXXXKRVAXXPPPXNYKKSQGXXXXXXXXXXXXXXXXXXXXXALTRXXPXPPXP 831
           +S+   P    +    PPP  ++  Q                            P PP P
Sbjct: 711 YSRPFRPTSRPKTPPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIPPPPPP 770

Query: 832 PPP 840
           PPP
Sbjct: 771 PPP 773



 Score = 25.4 bits (53), Expect(2) = 0.53
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 814 PXPPXPPPPG 843
           P PP PPPPG
Sbjct: 808 PPPPPPPPPG 817


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 813 PXPXPSPPXRXXRGXPXPKTPPP 881
           P P P PP    R  P P +PPP
Sbjct: 89  PTPPPPPPKPTIRPPPIPASPPP 111


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 813 PXPXPSPPXRXXRGXPXPKTPPP 881
           P P P PP    R  P P +PPP
Sbjct: 311 PTPPPPPPKPTIRPPPIPASPPP 333


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 819 PXPSPPXRXXRGXPXPKTPPPXR 887
           P P PP R  R  P P++PPP R
Sbjct: 138 PPPPPPPRVPR-TPPPRSPPPRR 159


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 887 PXRRGGFGXRXPPXXPGGGGXGGXG 813
           P RRGGF     P    GGG GG G
Sbjct: 153 PRRRGGFTLGGGPSGGRGGGRGGRG 177


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 875 GGFGXRXPPXXPGGGGXGGXG 813
           GG G   PP  P GGG GG G
Sbjct: 43  GGGGGCAPPPAPCGGGCGGGG 63



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 875 GGFGXRXPPXXPGGGGXGGXG 813
           GG G   PP  P GGG GG G
Sbjct: 67  GGGGGCAPPPAPCGGGCGGGG 87


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 875 GGFGXRXPPXXPGGGGXGGXG 813
           GG G   PP  P GGG GG G
Sbjct: 43  GGGGGCAPPPAPCGGGCGGGG 63



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 875 GGFGXRXPPXXPGGGGXGGXG 813
           GG G   PP  P GGG GG G
Sbjct: 67  GGGGGCAPPPAPCGGGCGGGG 87


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 23.4 bits (48), Expect(2) = 9.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 820 PPXPPPPGXXGG 855
           PP PPPPG   G
Sbjct: 590 PPPPPPPGGLMG 601



 Score = 23.0 bits (47), Expect(2) = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 814 PXPPXPPPP 840
           P PP PPPP
Sbjct: 559 PIPPPPPPP 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,814,396
Number of Sequences: 27780
Number of extensions: 175043
Number of successful extensions: 1277
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)