Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_P07
(937 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 36 0.061
11_01_0133 + 1121392-1122731,1123417-1123858 31 1.00
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 31 1.00
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.0
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.3
01_05_0513 - 22864657-22867899 29 5.3
12_01_0135 + 1042889-1044255,1045368-1045809 28 9.3
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 28 9.3
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 28 9.3
01_01_0070 - 542603-542686,542803-543441 28 9.3
>07_01_0479 + 3606663-3607448
Length = 261
Score = 35.5 bits (78), Expect = 0.061
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 345 GTXAXXXSGNXPXXGPXGXXGPPGLXSPHXXP*RHGXAPAXREAGXPXPQXXPXYPPXP 521
G G P GP GPP + P P G P G P P P PP P
Sbjct: 192 GVPPAFPGGPPPPPGPF-MRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPP 249
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 31.5 bits (68), Expect = 1.00
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 439 PDATGPPXPXXKRXXLXPSXPPXTRRPXQXPXXITQGXNMP 561
PDAT PP P L P PP + + P Q N P
Sbjct: 148 PDATAPPPPPTSVAALPPPPPPQPDKRRREPQCQEQEPNQP 188
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 31.5 bits (68), Expect = 1.00
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Frame = +3
Query: 378 PXXGPXGXXGPPGLXSPHXX-P*RHGXAPAXREAGXPXPQXXP---XYPPXPXKXXVXNP 545
P P PP + +P P H AP+ R G P P P P V NP
Sbjct: 48 PNPNPSPTLPPPPMSTPPVVAPPMHSFAPSFRPLGAPPPPPPPQQVQVQVPPQYGGVPNP 107
Query: 546 GXEHAPQNRXAKTPGTXKP 602
G A Q + P P
Sbjct: 108 GYPMAQQMQPPGVPHVMPP 126
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +3
Query: 408 PPGLXSPHXXP*RHGXAPAXREAGXPXPQXXPXYPPXPXKXXVXNPGXEHAPQNRXAKTP 587
PPG PH G P ++ P PQ PP P V + P + P
Sbjct: 59 PPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPP 118
Query: 588 GTXKP 602
P
Sbjct: 119 SAPPP 123
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = +1
Query: 439 PDATGPPXPXXKRXXLXPSXPPXTRRPXQXPXXITQGXNMPPKTAXXKXXEPXNPP 606
P GPP P + P PP ++P P Q PP P PP
Sbjct: 57 PPPPGPPPPHQPQFNFGPG-PPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPP 111
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +2
Query: 443 TPRXRPXXPXSGXAXXPAXPPLPAXPXKXX-RX*PRXXTCPPKPPXXNXXNPXTRP 607
+P RP P + P PP P P P+ PP PP N +P
Sbjct: 337 SPSPRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNLPKP 392
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +3
Query: 378 PXXGPXGXXGPPGLXSPHXXP*RHGXAPAXREAGXPXPQXXPXYPPXP 521
P GP G PP + PH AP + P PQ P P P
Sbjct: 232 PMHGPHGPMMPPAVHGPHGP-----MAPPMHQHQHPQPQPEPEPEPEP 274
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 439 PDATGPPXPXXKRXXLXPSXPPXTRRPXQXPXXITQGXNMP 561
PDAT PP P L P P + + P Q N P
Sbjct: 149 PDATAPPPPPTSVAALPPPPPAQPDKRRREPQCQEQEPNQP 189
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 439 PDATGPPXPXXKRXXLXPSXPPXTRR--PXQXPXXITQG 549
P TGPP P L PS PP + P + P + G
Sbjct: 164 PSPTGPPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDG 202
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 438 P*RHGXAPAXREAGXPXPQXXPXYP-PXPXKXXVXNPGXEHA 560
P HG P ++ G P PQ P P P PG +A
Sbjct: 360 PQPHGRLPPIQQTGQPHPQIRPGQPMNNPHAPMAAGPGHHYA 401
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +1
Query: 439 PDATGPPXPXXKRXXLXPSXPPXTRRPXQXPXXITQGXNMPPKTAXXKXXEPXNPPXXS 615
P PP P L PS PP P + P + PP P P S
Sbjct: 107 PPPVSPP-PATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAEAPTKS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,419
Number of Sequences: 37544
Number of extensions: 116059
Number of successful extensions: 534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -