Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P06
         (912 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.27 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 801 PPXPPPHXXXXXXPPPPXPPXLPXXPXXPXPXXHP 905
           P  PP        PP P  P LP  P  P    +P
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 770 PXXPPXPXPPPPPP 811
           P  PP P PP  PP
Sbjct: 178 PQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 770 PXXPPXPXPPPPPPXPP 820
           P  PP P PPP     P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,767
Number of Sequences: 336
Number of extensions: 2522
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)