Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P04
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    79   6e-15
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    78   1e-14
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832...    66   5e-11
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     44   2e-04
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857...    29   6.6  
02_05_0546 + 29889861-29890182,29891057-29892798                       29   6.6  

>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 33/75 (44%), Positives = 42/75 (56%)
 Frame = -3

Query: 427 KXPADLKTAPFDPRFPNXNQTRHXYQSYVDFHRCQKVXGEKYEPXYYFKRVYRXXCPXEW 248
           K    ++TAP D RFP  NQTRH +  YV++HRC    GE       F + YR  CP EW
Sbjct: 93  KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152

Query: 247 VDKWDNQXAEGTXAG 203
           V++W+ Q   GT  G
Sbjct: 153 VERWNEQRENGTFPG 167


>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 31/75 (41%), Positives = 42/75 (56%)
 Frame = -3

Query: 427 KXPADLKTAPFDPRFPNXNQTRHXYQSYVDFHRCQKVXGEKYEPXYYFKRVYRXXCPXEW 248
           K    ++TAP D RFP  NQTRH +  Y+++HRC    GE       F + YR  CP EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238

Query: 247 VDKWDNQXAEGTXAG 203
           +++W+ Q   GT  G
Sbjct: 239 IERWNEQRENGTFPG 253


>04_04_0390 -
           24882572-24882577,24882928-24883009,24883089-24883200,
           24883411-24883441
          Length = 76

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 26/56 (46%), Positives = 33/56 (58%)
 Frame = -3

Query: 415 DLKTAPFDPRFPNXNQTRHXYQSYVDFHRCQKVXGEKYEPXYYFKRVYRXXCPXEW 248
           ++KTAP D RFP  NQTRH +  Y+++HRC    GE       F + YR  CP EW
Sbjct: 20  EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 328 CQKVXGEKYEPXYYFKRVYRXXCPXEWVDKWDNQXAEGTXAG 203
           C +  GE  +    + + YR  CP EW+++W  Q A GT AG
Sbjct: 8   CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49


>04_02_0017 -
           8572400-8572732,8572818-8572919,8573138-8573230,
           8573391-8573519,8573781-8574025,8574184-8574453,
           8574590-8574752,8575965-8576063
          Length = 477

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 142 DLIKTNRNKLKHRERLGSKSYR 207
           +L KTNR+K+K+    GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327


>02_05_0546 + 29889861-29890182,29891057-29892798
          Length = 687

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -1

Query: 426 NXPPTSKQHLLTHGSLTXIRRGTXTKVTWTSTVARKXAAKNTSHXTISRECTGXFAPMSG 247
           N PP   +   T+G+L      T  +    +  +    AKN    T S + T    P++G
Sbjct: 98  NGPPNLVRTGATYGNLNKSFHDTCARSNLNAVQSSNPVAKNQDTKTASIDATAG-NPLTG 156

Query: 246 XTSGTTXAPKAPXP 205
             +  + AP  P P
Sbjct: 157 HHATPSVAPVPPKP 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,866,358
Number of Sequences: 37544
Number of extensions: 302752
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)