Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.67 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   1.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   1.2  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.5  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   2.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   4.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.7  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 377 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 261
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 145 LKTPLR*WKTL-TQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 321
           + TP+    T+ T ET T  +    T   + +TTT+      + T +  T T P  + T+
Sbjct: 91  MTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTT 150

Query: 322 SLPLS 336
            LP++
Sbjct: 151 ILPMA 155


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 190 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSL 339
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 237 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 341
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 162 VVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 329
           ++EN +  +  +     P   + PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 23  MLENEEEASHSQLFTPCPVPPSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 156 VKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 332
           V+++++  S +  + +  +P   N  +  N N    +P D       PP      +PTP
Sbjct: 126 VRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTP 184


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 263  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 370
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,360
Number of Sequences: 5004
Number of extensions: 53704
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)