Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P03
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0382 - 22501041-22501279,22501717-22501810                       36   0.043
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           36   0.057
03_06_0471 + 34169562-34169892,34170121-34170347                       33   0.40 
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746...    31   1.6  
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    30   2.8  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.8  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.8  

>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +3

Query: 99  KFFMIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 272
           K  ++F L L A  +A+A+      +N      +E     P   +PP    P+ + Y+P 
Sbjct: 11  KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66

Query: 273 DNGAYYVDPPQGRPYFKPTPFPGARGG 353
            +  YY DPP    Y+ P P P   GG
Sbjct: 67  HSPDYY-DPPPSPDYYDPPPSPYYGGG 92


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 153 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 323
           P    +  +    Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP   
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439

Query: 324 PTPFPGARG 350
           P P  GA G
Sbjct: 440 PPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 192 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 341
           Y P    P    PP  Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>05_05_0219 +
           23371561-23371680,23371799-23372207,23374520-23374635,
           23375385-23375855
          Length = 371

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
 Frame = +3

Query: 99  KFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIV----NPPKDYNPNGNGYE 266
           +F  + V+ LLA+A    P      A  G    P +  P          K+   + NG  
Sbjct: 5   RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64

Query: 267 PIDNGAYYVDPPQGRPYFKPTPFP 338
           P+    ++  PP  +P    TP P
Sbjct: 65  PVTKETHHQTPPPAKPPKDQTPPP 88


>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = +3

Query: 141 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 317
           +AQ P  V    DS  GY   + RP    P   Y P G   +    GA    PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 210 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 326
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 198 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 338
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,632,317
Number of Sequences: 37544
Number of extensions: 406497
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)