Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P02
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   118   1e-27
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    29   1.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   7.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +1

Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 411
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 412 KTTAKGLFKILEKYRPET 465
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 32/69 (46%), Positives = 44/69 (63%)
 Frame = +2

Query: 587 VEKKKAQLVVIAHDVDPIELVLFLXALCP*NGRTILHCQGKSRLGALVHRQEMXMLXSTN 766
           +E KKA+LV+IA DVDPIELV+FL ALC   G      + K+RLG ++H++   +L  T 
Sbjct: 143 IEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTE 202

Query: 767 VESGDRAXL 793
           V   D+  L
Sbjct: 203 VREEDKNEL 211


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 602 AQLVVIAHDVDPIELVLFLXALCP*NGRTILHCQGKSRLG 721
           ++ +V+A D +PIE++L L  LC       +    K+ LG
Sbjct: 48  SEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 346 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 447
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,127
Number of Sequences: 5004
Number of extensions: 54919
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)