Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P02
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   135   3e-32
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   124   1e-28
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   1e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   1e-21
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.036
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  135 bits (327), Expect = 3e-32
 Identities = 62/118 (52%), Positives = 78/118 (66%)
 Frame = +1

Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 411
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 412 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 585
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+L
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 587 VEKKKAQLVVIAHDVDPIELVLFLXALCP*NGRTILHCQGKSRLGALVHRQEMXMLXSTN 766
           VE ++AQLV+IAHDV+P+E+VL L ALC          +GK+ LG +V R+    +   +
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVD 207

Query: 767 VESGDRAXL 793
           V   D++ L
Sbjct: 208 VNPEDKSAL 216


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  124 bits (298), Expect = 1e-28
 Identities = 62/118 (52%), Positives = 78/118 (66%)
 Frame = +1

Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 411
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 412 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 585
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+L
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRL 127



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 587 VEKKKAQLVVIAHDVDPIELVLFLXALCP*NGRTILHCQGKSRLGALVHRQEMXMLXSTN 766
           VE ++AQLV+IAHDV+P+E+VL L ALC          +GK+ LG +V R+    +   +
Sbjct: 128 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVD 187

Query: 767 VESGDRAXL 793
           V   D++ L
Sbjct: 188 VNPEDKSAL 196


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 1e-27
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +1

Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 411
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 412 KTTAKGLFKILEKYRPET 465
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +1

Query: 232 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 411
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 507 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 388
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 602 AQLVVIAHDVDPIELVLFLXALCP*NGRTILHCQGKSRLG 721
           ++++V+A D +P+E++L L  LC       +  + K+ LG
Sbjct: 51  SEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 45  LFVSAIFAESLVYDLGHVSFRGL 113
           LF+ ++++  +VYD+ HV F GL
Sbjct: 719 LFIWSVYSPKVVYDMAHVIFFGL 741


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 380 LRSTNLPRHWTRLQLRA 430
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,083
Number of Sequences: 27780
Number of extensions: 328308
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)