Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O24
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    67   3e-12
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    66   9e-12
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   1.2  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.8  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.7  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    27   4.9  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   6.5  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = +3

Query: 222 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIXLREKGLIKQVVQHHGQVI 401
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+  L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 402 YTRA 413
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 30/63 (47%), Positives = 46/63 (73%)
 Frame = +3

Query: 222 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIXLREKGLIKQVVQHHGQVI 401
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+  L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 402 YTR 410
           YTR
Sbjct: 81  YTR 83


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 243 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 130
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 310 FNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL-ALP 158
           FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL ALP
Sbjct: 151 FNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFLEALP 201


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 250  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 152
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 124 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 222
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -2

Query: 358 FSLSXMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 194
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 193 FPLDHF 176
           +P+  F
Sbjct: 263 YPIITF 268


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 386 MLDYLFDETFFPKLDECSSR 327
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,740
Number of Sequences: 5004
Number of extensions: 51878
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)