Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O18
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.44 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.44 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   9.1  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   9.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 947  PPPPPPXXXPPXSAPP 994
            PPPPP    PP SAPP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 947 PPPPPPXXXPPXSAPP 994
           PPPPPP   PP   PP
Sbjct: 11  PPPPPPGFEPPSQPPP 26



 Score = 29.5 bits (63), Expect = 0.78
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 926 SLSXPXXPPPPPPXXXPPXSAPP 994
           SL     PPPPPP    P S PP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPP 25



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 931 LXPXXPPPPPPXXXSXPXXAPP 996
           L P  PPPPPP     P   PP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPP 25



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 946 PPPPPPXXXSXPXXAPP 996
           PPPPPP     P   PP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = +2

Query: 938 PXXPPPPP---PXXXPPXSAPP 994
           P  PPPPP   P   PP   PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 947 PPPPPPXXXPPXS 985
           PPPPPP   PP S
Sbjct: 238 PPPPPPPTLPPQS 250


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 947 PPPPPPXXXPPXSAP 991
           PPPPPP   P  +AP
Sbjct: 5   PPPPPPAPAPAAAAP 19


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
 Frame = +2

Query: 929  LSXPXXPPPPPPXXXP---PXSAPP 994
            LS    PPPPPP   P   P SA P
Sbjct: 1876 LSNQAAPPPPPPMALPKAGPPSAAP 1900


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect(2) = 9.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 947 PPPPPPXXXPPXS 985
           PPPPPP    P S
Sbjct: 240 PPPPPPRPSQPTS 252



 Score = 20.6 bits (41), Expect(2) = 9.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 923 FSLSXPXXPPPPPP 964
           FS S    PPPP P
Sbjct: 234 FSSSSTPPPPPPRP 247


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 49  KNLFLTIPGLQAXRXPGPKVSALKXNL 129
           KNL L + GL+A R   PK+   K NL
Sbjct: 471 KNLLLLLEGLKAQRHNKPKLFFRKFNL 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,884
Number of Sequences: 5004
Number of extensions: 14358
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)