Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O15
         (1049 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.15 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 22/79 (27%), Positives = 23/79 (29%)
 Frame = +1

Query: 586 PAPPPREKAVGXMGXPSPXPPLHXTPXPPRXFXXXXXXXXXXXSKGRXXPVXPPXPXGPX 765
           P PPPR  A G +  P P       P PP              S  R     P  P    
Sbjct: 339 PPPPPRSNAAGSI--PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 766 PRKTPXXTQXGXPKRPXTP 822
            R  P     G   R  TP
Sbjct: 397 GRSAPALPPLGNASRTSTP 415



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 713 PPKGGXXRFXPXXPGXLPPEKPPXXPKXAXPKGPXP 820
           PP        P  P  LPP  PP  P  A    P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
 Frame = +1

Query: 586 PAPPP--REKAVGXMGXPSPXPPLHXTPXPPRXFXXXXXXXXXXXSKGRXXPVXPPXPXG 759
           P PPP  R +    +G  S    L   P PPR              +GR  P  PP    
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR---SNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 760 PXP-RKTPXXTQXGXPKRPXTP 822
           P   R+ P  +       P  P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAP 391


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 583  TPAPPPREKAVGXMGXPSPXPPLHXTPXPP 672
            TP   P+  A   M  P+P PP    P PP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 22/59 (37%), Positives = 22/59 (37%)
 Frame = -1

Query: 761 GPXGXGGXTGXXRPLEGGXXXXXXXXGKXRGGXGVXWRGGXGEGXPIXPTAFSRGGGAG 585
           GP G GG  G  R   GG           RGG G   RGG G G         RGG  G
Sbjct: 133 GPAGRGGR-GGFRGGRGGSRGGFGG--NSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 586 PAPPPREKAVGXMGXPSPXPP 648
           P PPP    V   G P P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,983
Number of Sequences: 5004
Number of extensions: 27829
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)