Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O15
         (1049 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.8  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.6  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 734 RFXPXXPGXLPPEKPPXXPKXAXPKGPXP 820
           RF    P  LP  +PP  P    P GP P
Sbjct: 568 RFPAGFPN-LPNAQPPPAPPPPPPMGPPP 595



 Score = 24.2 bits (50), Expect = 6.6
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 743 PXXPGXLPPEKPPXXPKXAXPKGP 814
           P  P   PP  PP  P    P  P
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSP 597


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 583 TPAPPPREKAVGXMGXPSPXPPLHXTPXPPR 675
           TP PP     VG  G P P  P      P R
Sbjct: 147 TPGPPGYPGDVGPKGEPGPKGPAGHPGAPGR 177


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,434
Number of Sequences: 2352
Number of extensions: 7592
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 116752116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)