Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O14
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.67 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.6  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
 Frame = +3

Query: 609 PPXTXXXXPXPPPXXFXFXXPRXXGGGXXPXX-----LAXXXPPPPPXDXXFSFXGPXXX 773
           PP      P P P       P    GG  P            PPPPP     S  G    
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793

Query: 774 SPXNKXXPPP 803
           +P  +  P P
Sbjct: 794 APAPQAEPEP 803



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
 Frame = +2

Query: 716 PXPPPXXXPXVFLFXAPXXFPXKQXXPXPXXXXGAXXPFPLPP--XGGXPXXPPXP 877
           P PPP   P V +   P   P     P P    G   P P PP   G  P  PP P
Sbjct: 732 PPPPP---PAVIV---PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +3

Query: 633 PXPPPXXFXFXXPRXXGGGXXPXXLAXXXPPPPPXDXXFSFXGPXXXSPXNKXXPPPXPX 812
           P PPP       P        P       PPPPP     +  GP    P     PPP   
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-----PPPAVS 786

Query: 813 XG 818
            G
Sbjct: 787 AG 788



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = +2

Query: 818 AXXPFPLPPX----GGXPXXPPXPG 880
           A  P P+PP     GG P  PP PG
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 392 PPXPXXPXXPXPXXXXXXXGGXGXPFXGGVSXPPPQXXNFWGXGXPPP 535
           PP P     P P            P  GG   PPP      G G PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA-PIMGG-PPPPPPPPGVAGAGPPPP 778


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/57 (36%), Positives = 21/57 (36%)
 Frame = -1

Query: 889 GGSPGXGGXXGXPPPWGEGKRGXRPXXGXGGGXXLFXGEXXXGPKKENXXSXGGGGG 719
           GG  G GG  G PPP G G  G     G  G      G    GP        G GGG
Sbjct: 188 GGFGGFGGGSGGPPP-GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 37/158 (23%), Positives = 40/158 (25%), Gaps = 1/158 (0%)
 Frame = +2

Query: 419 PXPXXXXXXXGGXGXPFXGGVSXPPPQXXNFWGXGXPPPXQXXXETXXFFXGKXGAPXXX 598
           P P       G    P  G  + PPP   +    G  PP                AP   
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA----VSNPPAP--- 391

Query: 599 XXXPPXNXGXXXXTPPXXXXFFXSPVPGGGXXPXXSXXXPXPPPXXXPXVFLFXAPXXFP 778
              PP   G      P       +  P     P      P   P   P      AP   P
Sbjct: 392 ---PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 779 XKQXXP-XPXXXXGAXXPFPLPPXGGXPXXPPXPGGTP 889
                P  P    G     PLPP    P  PP P   P
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPP--AAPAPPPAPAPAP 484



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +3

Query: 633 PXPPPXXFXFXXPRXXGGGXXPXXLAXXXPPPPPXDXXFSFXGPXXXSPXNKXXPPPXP 809
           P PPP           G G     L    PPPPP     +  G     P  +  PPP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPP--PPPPPRS---NAAGSIPLPPQGRSAPPPPP 365


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = -1

Query: 250  VSTAGAALMTASRTL*PIFSRSLKKLPGAAETEAVAKTIANTKTKIFENFILYFREIETQ 71
            V T+     TAS+ + P F  S+    G  ETE + + +   K K   + +  +RE   Q
Sbjct: 1580 VPTSPLKAPTASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELTSTVNKYRE---Q 1636

Query: 70   RTSCNELNQNLKNSL 26
                  LN++ ++SL
Sbjct: 1637 LAMVQSLNEHAESSL 1651


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 171 GNFFKDLEKMGQRVRDAVI 227
           GNF KDL ++G+ + D++I
Sbjct: 253 GNFVKDLSQLGRNLEDSII 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,352
Number of Sequences: 5004
Number of extensions: 40531
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)