Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O13
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   4.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   5.9  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   7.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.8  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   7.8  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 752 IVLG*XAADSLTPVX--HYQIVVSNRDAVVFPEDRV 651
           I +G   A + TP+   HY  V + R+ V+ PEDR+
Sbjct: 374 IGIGIVLAGACTPIIYVHYNRVYTRRNGVMSPEDRL 409


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 663 WKYY-GITVTDDNLVVXDWR 719
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 765 NRTXHRFGIXSGGLPYASXSLPNCRQ*P*CRS 670
           N    R+G+ SGG+ Y++  L N R  P C S
Sbjct: 121 NDNFRRYGV-SGGIQYSNVPLINSRVTPNCES 151


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 150  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 284
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +3

Query: 162 EPMVNLDMKMKE-LCIMKLLDHILQPTMFEDIKEIAKEY-NIEKSCDKYMN-----VDVV 320
           +P+ +L +++KE L  +K L    Q    E I +   ++ N+ K   K +      +D+V
Sbjct: 298 QPLYDLTIQLKEELQSLKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLIDIV 357

Query: 321 KQFMEMYKMGM 353
           ++FM +Y  G+
Sbjct: 358 EKFMNVYFKGL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,409
Number of Sequences: 5004
Number of extensions: 56107
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)