Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_O09
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 38 0.015
11_06_0610 - 25449085-25453284 33 0.31
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 32 0.73
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 29 3.9
11_06_0126 - 20378611-20379719,20380081-20381239 29 3.9
05_05_0226 + 23442971-23443857,23444209-23446324 29 5.1
02_04_0610 + 24335153-24337724,24337835-24338256 29 5.1
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 29 6.8
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 29 6.8
>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 37.5 bits (83), Expect = 0.015
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 226 TAVSLILLLEKQSSGSI---IEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPGSV 396
T ++++LL + SGS +E + + D +RN WIG+ KE+V +V
Sbjct: 827 TGMAIVLLQNNRFSGSFPVFLERSTKLQLVDLSRNNFSGKLPTWIGDKKELVLLLLSHNV 886
Query: 397 *TGVIP-RATSRSSTRETILPSNSV 468
+G+IP T+ S+ R+ L NS+
Sbjct: 887 FSGIIPINITNLSNLRQLNLAGNSL 911
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/73 (28%), Positives = 27/73 (36%)
Frame = +1
Query: 676 DDXA*PPQXXSWYLKAPLNLRPPRSCS*ILQPASYNXGPXXXYXKVSXRXPEXQPPXFXK 855
+ A PP Y +P PP S + + P + PE PP
Sbjct: 591 ESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKS 650
Query: 856 PPTXGSKGSTPXP 894
PPT SK S+P P
Sbjct: 651 PPTPESKASSPPP 663
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 31.9 bits (69), Expect = 0.73
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 355 EGKEIVKHYFPGSV*TGVIPRATSRSSTRETILPSNSVLRQTQITNRIAYGRCQRTRAAR 534
+ E +KH G A + T++P+N++L + + + G R A
Sbjct: 181 DNAESLKHQGNRLAEEGKYHEALGKWEAALTLMPNNAILHEQKAQILLELGDAWRALTAA 240
Query: 535 TSAGKLIPLWGE 570
T A +L PLW E
Sbjct: 241 TRATELDPLWPE 252
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 253 EKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPGSV*TGVIPRATSRS 432
+KQ + + V +L +DG+ V + Y L IG K++ H + G + GV R
Sbjct: 129 QKQEFATWLRQRVIDLCKDGSSQVSDCLYALAIGPHKKV--HKYSGCIIGGVRFLTKERE 186
Query: 433 STRET 447
R+T
Sbjct: 187 EGRKT 191
>11_06_0126 - 20378611-20379719,20380081-20381239
Length = 755
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 232 VSLILLLEKQSSGSI---IEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPGSV*T 402
+ ++LL + +G+ +E + I D +RN WIG+ K++V + +
Sbjct: 485 IKVLLLSNNRFAGTFPAFLEGCIQLQIIDLSRNNFSSKLPKWIGDKKDLVLLRLSYNAFS 544
Query: 403 GVIP-RATSRSSTRETILPSNSV 468
GVIP T+ + R+ L +NS+
Sbjct: 545 GVIPDNITNLPNLRQLDLAANSL 567
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 121 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 300
LA A + LD+ +++A + R + TTAD TAV+ + E +E+ V+
Sbjct: 31 LAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRF 90
Query: 301 I 303
+
Sbjct: 91 L 91
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 142 IDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 300
+DL++N+L A + +DA+T TA+ ++ L E Q G +I +++ +L
Sbjct: 313 LDLELNMLEAKDTEGWKFLDALTNC---TALEVLALAENQLQG-VIPNSIGSL 361
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 219 IGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHA 115
+G GD DE R R+ +S + N+ V + AG +HA
Sbjct: 272 LGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHA 306
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -2
Query: 859 GAWXXGXVXFPVPXGKLXGXXXKGXDCNWPVVRFRNRTW 743
G W F P G G G DC+ R+R R W
Sbjct: 58 GGWLGRGRDFTDPVGAGDGDGGNGGDCSGAAKRWRRRIW 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,429,877
Number of Sequences: 37544
Number of extensions: 536675
Number of successful extensions: 1240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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