Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_O06
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 67 3e-12
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 6e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 3e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 1e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 9e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.006
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.008
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.011
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.011
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.033
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.044
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.076
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.13
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.41
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 29 0.71
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.71
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.94
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 1.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 2.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.2
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 5.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 5.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 5.0
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 26 6.6
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 67.3 bits (157), Expect = 3e-12
Identities = 34/86 (39%), Positives = 56/86 (65%)
Frame = +3
Query: 147 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLED 326
P+PSEPP+ A+VGNL + + D+ F + + ++RLV+D T++ +GF YVEFE +
Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADT 145
Query: 327 LMKAIDLNGIINVDGNILKIDVAEEK 404
L A+ L+G ++ G ++I VAE +
Sbjct: 146 LSAALALSG-EDLMGRPVRITVAEPR 170
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 6e-06
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 156 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 332
SEP +VGNL + D++ F I+++RL D ++ + KGF YV F ++
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 333 KAIDLNG 353
K +++NG
Sbjct: 422 KCVEMNG 428
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
+VG L + + + F + +I R++MD ++ + KG+ YV+FE E A+ NG
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 354 IINVDGNILKIDVAEEK 404
+DG ++ +D++ +
Sbjct: 326 TKEIDGRMVNLDLSNPR 342
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 147 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 323
P+P + +VGNL + + R F D SI VR+V D +T+ KGF Y++F+
Sbjct: 263 PMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 324 DLMKAIDLNGIINVDGNILKI 386
+ KA+ LN +G L+I
Sbjct: 323 GVDKALLLNEKKMPEGRTLRI 343
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 159 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 335
EP +VGNL D+ F + I+ VRL+ ++T K KGF +V+F ++ MK
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
Query: 336 AIDL 347
A++L
Sbjct: 285 AMEL 288
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLSIK-NVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
Y+GNL + + DI +F + ++ LV DKET K KGF ++++E + A+D
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMT 93
Query: 354 IINVDGNILKID 389
+ + ++++D
Sbjct: 94 NVKLLDRLVRVD 105
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 153 PSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDL 329
P EP V NL + + I IF I ++ + + K+++ KG+CY+E+ Y +
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 330 MKAIDLNGIINVDGNILKIDV 392
A+D +DG L + +
Sbjct: 154 ANAVDKMNNAELDGEELFVSI 174
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 147 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 323
P S Y V + + + +F D +KN+ L +D+ T KG+ +E+ LE
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 324 DLMKAIDLNGIINVDGNILKIDVA 395
KA+D + +D L++D A
Sbjct: 63 QAQKAVDEKNLSLLDEK-LEVDFA 85
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.3 bits (80), Expect = 0.006
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 171 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 338
+ ++ NL + D+ +F P ++ V + +DK+T+ KGF Y++F +D ++A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 311
+VGN+P + + + IF + +K +LV+D ET KG+ + EF
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
YVGN+ + ++ F S+ V ++ DK T KGF Y+EF + A+ LNG
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNG 117
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 344
YVG L + + + +F + + ++R+ D T + G+ YV F +ED KA+D
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Score = 30.7 bits (66), Expect = 0.31
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
Y+ NL + I + + + +F I ++ LV D + DK +GF +V + E KA+D
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 354 IINVDGNILKIDVAEEK 404
G L + A++K
Sbjct: 323 DKEYKGKKLYVGRAQKK 339
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.033
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 159 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 335
E K +VG +P + + F + + L+MDK+T + +GF +V +E E ++
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVE 302
Query: 336 AIDLNGIINVDGNILKIDVAEEK 404
A I + G +++ A K
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPK 325
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.044
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 350
YVGNLP ++ +F D+ S+ R+ + T + KGF V+FE D +I+ LN
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLN 341
Query: 351 G 353
G
Sbjct: 342 G 342
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.7 bits (71), Expect = 0.076
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
YVGNL + I +F I+ + + +D+ T GFC+VE+ +D + ++
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 354 IINVDGNILKIDV 392
++D I++ D+
Sbjct: 95 RTSLDERIIRADL 107
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 353
+V + S + + ++ +IF ++ +VR++ + T +GF ++ F +E+ AID
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
Query: 354 IINVDGNILKIDVAE 398
G +L + A+
Sbjct: 164 SQEFYGRVLNVQKAK 178
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 168 YKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 338
++ +VGNL + + + + F + S+ ++V D+E K +GF +V F+ + +KA
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKA 86
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 198 GIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVE 308
GI+ NR+ D + N R+V+D E + + YVE
Sbjct: 39 GILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTIVYVE 75
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.71
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 171 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 341
K Y+ NLP + + + + P + + +L+ + KGFC+ EF+ D AI
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.94
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 180 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 344
V NL + ++ +F I+ V L DKET + KGF +V + + +KA D
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARD 261
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 350
++G L + + I +++ L V+L+ ++ T G+C+VEF + A+ +N
Sbjct: 96 WMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 311
+VGNLP + F + +VR+ DK + + KG+ +VEF
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 177 YVGNLPSGIIQGDINRIF-PDLSIKNVRLV---MDKETDKFKG--FCYVEFEYLEDLMKA 338
YVGNLPS D++ +F P + ++ +K TD F ++ FE A
Sbjct: 23 YVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNA 82
Query: 339 I-DLNGIINVDGNILKID 389
I LNG + GN LK++
Sbjct: 83 IASLNG-SSFQGNTLKVE 99
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVE 308
EP + +VGNLPSG+ + F ++ ++R++ K + F F VE
Sbjct: 584 EPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVE 633
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 213 DINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKID 389
D+ IF I + +++ DKET + ++EF+ E + KA + +D + + +D
Sbjct: 259 DLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVD 318
Query: 390 VAE 398
++
Sbjct: 319 FSQ 321
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 159 EPPYKAYVGNLPSGIIQGDINRIFPDLSI 245
E YKA+V NL I GDI + P I
Sbjct: 212 EDGYKAFVSNLKEHIFNGDIFQAVPSQRI 240
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 243 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 350
+ V L+ +KET K + F + +F L+D ++ N
Sbjct: 98 VSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEAN 133
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 404 FFFSDINF*YITIYVN----NPIQIYCFHQIFEIFKFYIAKSFEFVCL 273
FFFS +I I+++ N + +CF F +F F+ SF F L
Sbjct: 83 FFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFF---SFLFTSL 127
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 559 PAVTSDGATAIVTAGRXSPPAGSXEPPRPVTGGPHGXRSGASN 687
P TAI TA R S G +PP P GP +S+
Sbjct: 207 PVELKPNITAIDTAERNSYLWGILQPPEPSAEGPFTWNGASSH 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,579
Number of Sequences: 5004
Number of extensions: 35667
Number of successful extensions: 129
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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