Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O03
         (1081 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.16 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -2

Query: 819 PKKKXVXXXPXXXXGGGRPPXPPXXXXXGGGXXPPPXXGXXPPP 688
           P    +   P     GG PP PP     G G  PPP     PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPP 783



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 715 GGXXXPPXXXXTRGXGXAPPPP 780
           GG   PP      G G  PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 689 GGGXXPFXGGGXXPPPXXXXXGGXGG 766
           GGG   F GG   PPP     GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGG 212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = -2

Query: 831 PXXXPKKKXVXXXPXXXXGGGRPPXPPXXXXXGGGXXPPP 712
           P   P+       P    G   PP PP       G  PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,924
Number of Sequences: 5004
Number of extensions: 44290
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)