Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_O02
(997 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.44
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.44
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.77
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.4
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 676 GGAXRG-GGXGGXPXGXGGXRGGXXAVGRGG 587
GG+ G GG G G GG RGG GRGG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42
Score = 29.9 bits (64), Expect = 0.58
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 658 GGXGGXPXGXGGXRGGXXAVGRGG 587
GG GG G GG RGG RGG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGG 46
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -1
Query: 673 GAXRGGGXGGXPXGXGGXRGGXXAV--GRGG 587
G RGG GG G G RGG GRGG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 676 GGAXRG-GGXGGXPXGXGGXRGGXXAVGRGG 587
GGA G GG GG G GG GG +GG
Sbjct: 41 GGARGGRGGRGGARGGRGGSSGGRGG-AKGG 70
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.33
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 583 LPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTG 696
+PPP+P PP P G PP P PP G
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPP 690
P LPP +P P P G P + P P P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPT 693
P PPP+ P P S PP P P PP+
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Score = 27.1 bits (57), Expect = 4.1
Identities = 34/146 (23%), Positives = 38/146 (26%), Gaps = 6/146 (4%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXPRXHXARVLRAXXLXXXX 756
P +PP P P P P PP P PP T P R + +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAP---PPIP--PPSNGTVSSPPNSPPRPIAPVSMNPAI 284
Query: 757 XXXXXXXXPPPXXARLXXXXXXXXXXXXPPXAXRRFTXX*XPXPXG------PPPCXXPR 918
PPP PP R P G PPP PR
Sbjct: 285 NSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344
Query: 919 XXXFXXXXXXXXXXXXXXAXPPPPPP 996
+ PPPPPP
Sbjct: 345 ----SNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 586 PPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
PPP PR P G PP PR P TG P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPR--SAPSTGRQP 376
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXP 687
P PPS PP P P P P PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.44
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -1
Query: 676 GGAXRGGGXGGXPXGXGGXRGGXXAVGRGG 587
G A RGG GG G GG RGG RGG
Sbjct: 133 GPAGRGG-RGGFRGGRGGSRGGFGGNSRGG 161
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 676 GGAXRGGGXGGXPXGXGGX-RGGXXAVGRGG 587
GG RGG GG G GG RGG RGG
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 676 GGAXRGGGXGGXPXGXGGXRGGXXAVGRGG 587
GG RGG GG GG RGG RGG
Sbjct: 163 GGGSRGGFGGG---SRGGSRGGFRGGSRGG 189
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 673 GAXRGGGXGGXPXGXGGX-RGGXXAVGRGG 587
G RGG G G GG RGG RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.77
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXP-RXPPXPPTGXXPRXHXARV 726
P PP P PP P P S P P PP PP P A V
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 586 PPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
PP +P PP P+ P S PP P PP P P
Sbjct: 124 PPSAPA---PP-TPQSELRPPTSAPPRPSIPPPSPASAPP 159
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXP 687
P +PPPSP P P P S PP P P P
Sbjct: 147 PSIPPPSPASAPP--IPSKAPPIPSSLPP-PAQPAAP 180
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +1
Query: 586 PPPS--PRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
PP S PR PP P P PP P P P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 586 PPPSPRXXXPPFXPRXRGGXPXSXPPXPRXP-PXPPTGXXP 705
P P+P PP P+ G P PP P P P G P
Sbjct: 1170 PVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 586 PPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
P P P PP P G P P PP PP P
Sbjct: 1160 PVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXP----RXPPXP-PTGXXP 705
P PP P P P+ G P + PP P P P P+G P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 583 LPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXP-PXPPTGXXP 705
+PP P PP P+ G P PP P P P G P
Sbjct: 1188 VPPVPPPSEAPPV-PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 583 LPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXP-PTGXXP 705
+PP P PP P G P P + PP P P+ P
Sbjct: 1207 VPPVPPPSTAPPV-PTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 577 PRLPPPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
P PPP PP P G P S PP P P+ P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG-PPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 589 PPSPRXXXPPFXPRXRGGXPXSXPPXPRXPPXPPTGXXP 705
PP PP P P S PP P PP P P
Sbjct: 1699 PPQMSAPTPP-PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +1
Query: 586 PPPSPRXXXPP-FXPRXRGGXPXSXPPXPRXPPXP 687
PP P+ PP P S PP P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 661 GGGXGGXPXGXGGXRGGXXAVGRG 590
GGG GG P G GG G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,141
Number of Sequences: 5004
Number of extensions: 12157
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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