Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_O01
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    29   5.7  
AC024790-11|AAF60631.1|  199|Caenorhabditis elegans Hypothetical...    29   5.7  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    28   10.0 
AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical ...    28   10.0 

>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 289 KPVTTERSSMMTAAN*PGRPTAPGVLGPAGDSTNYG--GRLDWANKNAEAAIDINRQIGG 462
           +P T   +S       PG P   G +GP G + N G  G+      N  A       +GG
Sbjct: 149 RPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAPGNNGFAGGPGAPGLGG 208

Query: 463 RSGMTATGSGVLGS*QEHPPLSRRYGLXGI 552
           + G +   +GV G+  +   + R  GL G+
Sbjct: 209 KDGQSG-NAGVPGAPGKITNIQRPAGLPGV 237


>AC024790-11|AAF60631.1|  199|Caenorhabditis elegans Hypothetical
           protein Y47D7A.12 protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 325 AAN*PGRPTAPGVLGPAGDSTNYGG 399
           AA+ P  PT   ++G +  STNYGG
Sbjct: 89  AASPPAPPTDAQIVGSSSSSTNYGG 113


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 199  DTRVTSPGTNKWGEGRSSARWAKMMMGFLVKP 294
            +TR  + GTNK  +GR+  R   M +G ++KP
Sbjct: 3195 ETRTRNKGTNKRRDGRNDGR--NMNLGSIIKP 3224


>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 331 N*PGRPTAPGVLGPAGDSTNYG 396
           N PG P  PG +GP GDS   G
Sbjct: 213 NFPGPPGPPGPVGPPGDSGERG 234


>AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical
           protein Y11D7A.11 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 337 PGRPTAPGVLGPAGDSTNYGGRLDWANKNAEAAIDINRQIG 459
           PGRP   G+ GPAG     G  LD  + +  + I+++   G
Sbjct: 132 PGRPGRDGIDGPAGKPGRDGQDLDGESSSDGSQIELDCPAG 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,945,469
Number of Sequences: 27780
Number of extensions: 386241
Number of successful extensions: 2068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)