Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N21
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.032
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.91
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 28 1.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 27 3.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 774 TPPPPPRGXXXXFXXXPXPXPXPXPXPXXXPXXXXPPPPXGG 899
+PPPPP P P P P P P PPPP G
Sbjct: 731 SPPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 33.1 bits (72), Expect = 0.056
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 508 PXGPPPPXXGGXXPPXXKKXLLGXXXPPPP 597
P PP P GG PP + G PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 32.3 bits (70), Expect = 0.098
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 518 PPPXXXGXXXPPXXKKXXLGXGPPPPPXXXP 610
PP G PP G GPPPPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 729 PXPGXXXXXXXXPXXTPPPPPRGXXXXFXXXPXPXPXPXPXPXXXPXXXXPPPP 890
P P P P PPP P P P P P PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 774 TPPPPPRGXXXXFXXXPXPXPXPXPXPXXXPXXXXPPPPXGG 899
TPPPPP P P P P P P P G
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 765 PXXTPPPPPRGXXXXFXXXPXPXPXPXPXPXXXPXXXXPPPPXG 896
P TPP P+ P P P P P P PP P G
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVP---PPPSAPPMPAG 1726
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 140 PSPATIRNTIKYCLAGHLRDIFQDYSFPITIKS 42
P+P+ I N I+ L+ HL ++YSF + I++
Sbjct: 70 PNPSIISNIIQKALSNHLLYSSKNYSFIVNIRA 102
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 39 LRFDSYWKAVVLKNITKMARQTILYRVPDC 128
L FDSYW+ + + IT +A + I + +C
Sbjct: 860 LSFDSYWQTKLKRKITSLAVEWISFICDEC 889
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 822 PXPXPXPXPXPXXXPXXXXPPPPXGG 899
P P P P P P PPPP G
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +3
Query: 777 PPPPPRGXXXXFXXXPXP--XPXPXPXPXXXPXXXXPPPP 890
PPPPPR P P P P P PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Frame = +1
Query: 502 KAPXGPPPP--XXGGXXPPXXKKXLLGXXXPPPPXXXXXKXXXXXPXXXXXSXXXXPPXX 675
K P PPPP G P PPPP P + PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 676 XPXXXXXXPP 705
P PP
Sbjct: 369 APSTGRQPPP 378
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 275 VAGLNEGADASGVSQVRVVAGPHARGHQSNGHFQGIHI 162
+ G NE A +G + VVA GH + +Q I++
Sbjct: 26 IKGFNENASTNGTTSFNVVAISSMEGHYVSKDYQPINL 63
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = -3
Query: 886 GGGXXXXGXXXGXGXGXGXGXGXXXXKXXXPRGGGGGVXXG 764
GG G G G G G G RGG GG G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 81 YFSRLQLSNNYQILRNSL 28
YFSRLQL +Y+ L N L
Sbjct: 386 YFSRLQLQADYEFLVNEL 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,327
Number of Sequences: 5004
Number of extensions: 44230
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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