Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N20
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    32   0.51 
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    31   0.89 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   3.6  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    28   8.3  
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546...    28   8.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.3  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 24/89 (26%), Positives = 30/89 (33%)
 Frame = +2

Query: 467 PPPHXXXKFLAXSPXPLPXFQGAPGGFXXXXXFXKNCGPXKXKKXXXXPPFFXKXXXPPP 646
           PP      FLA  P P P   G P        F    GP + ++    P  + +   PPP
Sbjct: 43  PPQGAPPPFLAPPPPPPP---GPPPPHQPQFNFGP--GPPQQQQPPPPPQMYYQPPPPPP 97

Query: 647 KKFXFFXXXXXXPXXPPPXXXXXXPXXPP 733
             +         P  PPP      P  PP
Sbjct: 98  P-YGVNSSQPPPPPPPPPSPPPSAPPPPP 125


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -1

Query: 225 SIFLXSFHLGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKND 46
           SI     HLG G  L+ PR   +     K+  K +LP+  S G F    T SF+ +  + 
Sbjct: 219 SILAMRLHLGYG--LSGPRHRPDYNLSYKVDLKSVLPELVSVG-FSASTTTSFELHQLHS 275

Query: 45  QILRNSL 25
               +SL
Sbjct: 276 WYFSSSL 282


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/70 (28%), Positives = 20/70 (28%)
 Frame = +3

Query: 639  PPPKNFXFFXPXXXXPXXPXPXXXXXPPXXXXXXXXXXXXXPPPXXXXXXXXGGGGPXLX 818
            PPP            P  P P      P             PPP         GG P   
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFR----GGTPPPN 1177

Query: 819  XGGGXAPPPP 848
              GG APPPP
Sbjct: 1178 AHGGVAPPPP 1187


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 762 PPPXXXXXXXXGGGGPXLXXGGGXAP 839
           PPP        GGGGP +  GGG AP
Sbjct: 63  PPPTAAGGQGGGGGGP-VSGGGGSAP 87


>06_01_0738 +
           5458182-5458374,5460512-5461766,5461861-5462053,
           5462151-5462344,5462443-5462601,5462683-5463025
          Length = 778

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 847 GGGGAXPPPXXXXGPPPPXXXXXXXXGGG 761
           GGGG+ PPP    G   P        GGG
Sbjct: 84  GGGGSAPPPGNLAGSGTPPAKGSGGDGGG 112


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 840 GGPPPPPXXXXXPPXPXXXGXXXG 769
           G PPPPP     PP P   G   G
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKG 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,103,076
Number of Sequences: 37544
Number of extensions: 464005
Number of successful extensions: 2839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2287
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)