Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N19
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    86   7e-18
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 43/71 (60%), Positives = 52/71 (73%)
 Frame = +2

Query: 104 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTXTALRNAGLTVQDVSDIXRAPEMLGXPVK 283
           ALLSV DKTGLL LAK+L+  G++L+ SGGT   +R +G+ V DVS I  APE+LG  VK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 284 TLHPAVPAGXL 316
           TLHPAV  G L
Sbjct: 63  TLHPAVHGGIL 73


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 61  VVFEQTEHGVKWKTSSSQRFGQNGA 135
           V  +  +HG++W T   Q FG+  +
Sbjct: 641 VAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +1

Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPP 750
           PPPPP      G    PP G S        PPP   +  P     PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSA-------PPPPPPRSAPSTGRQPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,151
Number of Sequences: 5004
Number of extensions: 37561
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)