Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N19
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 91 9e-19
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.35
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.35
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.46
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.46
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.46
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.61
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 31 0.80
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 1.9
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 4.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.3
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 28 7.5
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 28 7.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 7.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.9
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 28 9.9
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 91.1 bits (216), Expect = 9e-19
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +2
Query: 83 MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTXTALRNAGLTVQDVSDIXRAPE 262
M LA++SVSDKTGL+ LA L GL LIASGGT A+R+ G+ V DV+D+ + PE
Sbjct: 1 MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60
Query: 263 MLGXPVKTLHPAVPAGXL 316
MLG VKTLHPAV G L
Sbjct: 61 MLGGRVKTLHPAVHGGIL 78
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.35
Identities = 31/114 (27%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Frame = +2
Query: 431 PRXFTPGGDPGPKXLXIGGGCNPPXXPXXQKTPN-PGFPXXLVXXPXXXXXFXPXXXPXX 607
P TPG P P G PP P +TP PG P + P F P
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG--MPPPPPPSRFGPPGMGGM 333
Query: 608 XPXPXPXXWGXXGKKLXPQXGXXPXFFGKKTPPXIXSKXSP--XXKXFPPGXPP 763
P P P G P G PP +P PP PP
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 553 GXPAPXTXXXFXXKXPXXXPPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPP 708
G P P F PPPPP + G PP P PPP
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Frame = +1
Query: 598 PXXXPPPPPXXL---GXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXX 768
P PPPPP G G PP G PPP P PP P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373
Query: 769 XXXXXXXXPP 798
PP
Sbjct: 374 PPSGHGMIPP 383
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/99 (23%), Positives = 25/99 (25%)
Frame = +2
Query: 518 QKTPNPGFPXXLVXXPXXXXXFXPXXXPXXXPXPXPXXWGXXGKKLXPQXGXXPXFFGKK 697
Q P P P + P P P P P W + P G
Sbjct: 259 QYPPVPPPPPSVTPMPPPMPP-TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 317
Query: 698 TPPXIXSKXSPXXKXFPPGXPPXXXXXXGXXPPXXKXXP 814
PP P PP PP G PP P
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.35
Identities = 31/114 (27%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Frame = +2
Query: 431 PRXFTPGGDPGPKXLXIGGGCNPPXXPXXQKTPN-PGFPXXLVXXPXXXXXFXPXXXPXX 607
P TPG P P G PP P +TP PG P + P F P
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG--MPPPPPPSRFGPPGMGGM 343
Query: 608 XPXPXPXXWGXXGKKLXPQXGXXPXFFGKKTPPXIXSKXSP--XXKXFPPGXPP 763
P P P G P G PP +P PP PP
Sbjct: 344 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 553 GXPAPXTXXXFXXKXPXXXPPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPP 708
G P P F PPPPP + G PP P PPP
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Frame = +1
Query: 598 PXXXPPPPPXXL---GXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXX 768
P PPPPP G G PP G PPP P PP P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383
Query: 769 XXXXXXXXPP 798
PP
Sbjct: 384 PPSGHGMIPP 393
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/99 (23%), Positives = 25/99 (25%)
Frame = +2
Query: 518 QKTPNPGFPXXLVXXPXXXXXFXPXXXPXXXPXPXPXXWGXXGKKLXPQXGXXPXFFGKK 697
Q P P P + P P P P P W + P G
Sbjct: 269 QYPPVPPPPPSVTPMPPPMPP-TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 327
Query: 698 TPPXIXSKXSPXXKXFPPGXPPXXXXXXGXXPPXXKXXP 814
PP P PP PP G PP P
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXP 762
PPPPP G P G SP +PPP Q + PP P
Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +3
Query: 657 PPXGGXXLXFSXKKPPPXFXAXXPPXKKXS----PRXXPPXXXXXXGXXPPXXXXPP 815
PP G L S PPP PP + S P PP PP PP
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Score = 30.7 bits (66), Expect = 1.4
Identities = 32/129 (24%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Frame = +2
Query: 431 PRXFTPGGDPGPKXLX-IGGGCNPPXXPXXQKTPNPGF------PXXLVXXPXXXXXFXP 589
P +P P PK + G +PP P P P P P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 590 XXXPXXXPXPXPXXWGXXGKKLXPQXGXXPXFFGKKTPPXIXSKXSPXXKXFPP-GXPPX 766
P P P G PQ G P G +PP + + PP G PP
Sbjct: 292 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 351
Query: 767 XXXXXGXXP 793
G P
Sbjct: 352 GSPPTGRPP 360
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +1
Query: 610 PPPPPXX---LGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXX 780
PPPPP L G PP SP R +PPP P P G P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAG 295
Query: 781 XXXXPP 798
PP
Sbjct: 296 SPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXP 762
PPPPP G P G SP +PPP Q + PP P
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +3
Query: 657 PPXGGXXLXFSXKKPPPXFXAXXPPXKKXS----PRXXPPXXXXXXGXXPPXXXXPP 815
PP G L S PPP PP + S P PP PP PP
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Score = 30.7 bits (66), Expect = 1.4
Identities = 32/129 (24%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Frame = +2
Query: 431 PRXFTPGGDPGPKXLX-IGGGCNPPXXPXXQKTPNPGF------PXXLVXXPXXXXXFXP 589
P +P P PK + G +PP P P P P P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 590 XXXPXXXPXPXPXXWGXXGKKLXPQXGXXPXFFGKKTPPXIXSKXSPXXKXFPP-GXPPX 766
P P P G PQ G P G +PP + + PP G PP
Sbjct: 313 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 372
Query: 767 XXXXXGXXP 793
G P
Sbjct: 373 GSPPTGRPP 381
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +1
Query: 610 PPPPPXX---LGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXX 780
PPPPP L G PP SP R +PPP P P G P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAG 316
Query: 781 XXXXPP 798
PP
Sbjct: 317 SPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXP 762
PPPPP G P G SP +PPP Q + PP P
Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +3
Query: 657 PPXGGXXLXFSXKKPPPXFXAXXPPXKKXS----PRXXPPXXXXXXGXXPPXXXXPP 815
PP G L S PPP PP + S P PP PP PP
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Score = 30.7 bits (66), Expect = 1.4
Identities = 32/129 (24%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Frame = +2
Query: 431 PRXFTPGGDPGPKXLX-IGGGCNPPXXPXXQKTPNPGF------PXXLVXXPXXXXXFXP 589
P +P P PK + G +PP P P P P P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 590 XXXPXXXPXPXPXXWGXXGKKLXPQXGXXPXFFGKKTPPXIXSKXSPXXKXFPP-GXPPX 766
P P P G PQ G P G +PP + + PP G PP
Sbjct: 298 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT 357
Query: 767 XXXXXGXXP 793
G P
Sbjct: 358 GSPPTGRPP 366
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +1
Query: 610 PPPPPXX---LGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXX 780
PPPPP L G PP SP R +PPP P P G P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAG 301
Query: 781 XXXXPP 798
PP
Sbjct: 302 SPPPPP 307
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +1
Query: 598 PXXXPPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPP 750
P P PPP +G + PP G P K PPP Q F PP
Sbjct: 713 PGYPPAPPPPGVGPPPPQGIPPMGFDP----NKPPPPMFQQGFNAGAPPPP 759
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 434 RXFTPGGDPGPKXLXIGGGCNPPXXPXXQK 523
R TP G+P P+ IGGG NP P K
Sbjct: 236 RPITPHGNPKPQNYQIGGGWNPYANPPSAK 265
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/142 (21%), Positives = 34/142 (23%), Gaps = 6/142 (4%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G NP P G P G G + P P P P
Sbjct: 256 PPGPFNPSGAPPSGGPPGPFDP--SGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPS 313
Query: 594 XXPXXP------PXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRX 755
P P P G PP GG F+ PP P +P
Sbjct: 314 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 373
Query: 756 XPPXXXXXXGXXPPXXXXPPVF 821
P PP P F
Sbjct: 374 GGPPGPFDPSGAPPSGGPPGPF 395
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/142 (21%), Positives = 34/142 (23%), Gaps = 6/142 (4%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G NP P G P G G + P P P P
Sbjct: 316 PPGPFNPSGAPPSGGPPGPFDP--SGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 373
Query: 594 XXPXXP------PXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRX 755
P P P G PP GG F+ PP P +P
Sbjct: 374 GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 433
Query: 756 XPPXXXXXXGXXPPXXXXPPVF 821
P PP P F
Sbjct: 434 GGPPGPFNPSGAPPSGGPPGPF 455
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/142 (21%), Positives = 34/142 (23%), Gaps = 6/142 (4%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G NP P G P G G + P P P P
Sbjct: 346 PPGPFNPSGAPPSGGPPGPFDP--SGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPS 403
Query: 594 XXPXXP------PXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRX 755
P P P G PP GG F+ PP P +P
Sbjct: 404 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 463
Query: 756 XPPXXXXXXGXXPPXXXXPPVF 821
P PP P F
Sbjct: 464 GGPPGPFNPSGAPPSGGPPGPF 485
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/142 (21%), Positives = 34/142 (23%), Gaps = 6/142 (4%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G +P P G P G G + P P P P
Sbjct: 361 PPGPFDPSGAPPSGGPPGPFDP--SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS 418
Query: 594 XXPXXP------PXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRX 755
P P P G PP GG F+ PP P +P
Sbjct: 419 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 478
Query: 756 XPPXXXXXXGXXPPXXXXPPVF 821
P PP P F
Sbjct: 479 GGPPGPFDPSGAPPSGGPPGPF 500
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/142 (21%), Positives = 34/142 (23%), Gaps = 6/142 (4%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G +P P G P G G + P P P P
Sbjct: 376 PPGPFDPSGAPPSGGPPGPFDP--SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 433
Query: 594 XXPXXP------PXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRX 755
P P P G PP GG F+ PP P +P
Sbjct: 434 GGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 493
Query: 756 XPPXXXXXXGXXPPXXXXPPVF 821
P PP P F
Sbjct: 494 GGPPGPFNPSGAPPSGGPPGPF 515
Score = 28.3 bits (60), Expect = 7.5
Identities = 31/135 (22%), Positives = 34/135 (25%)
Frame = +3
Query: 414 PXGVXNPXXLPXGGTPXXKXSXLGGGVTXXGXXXXXXXXTRGSPXXWXPXPXXXXXFXPX 593
P G NP P G P + G G + P P P P
Sbjct: 406 PPGPFNPSGAPPSGGPPGPFNP--SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS 463
Query: 594 XXPXXPPXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAXXPPXKKXSPRXXPPXXX 773
P P P PP GG F PP P +P P
Sbjct: 464 GGPPGPFNP---------SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGP 514
Query: 774 XXXGXXPPXXXXPPV 818
PP PPV
Sbjct: 515 FDPSGAPP-SGMPPV 528
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 713 KXGGGFFXRKXKGXXPXGGXIFXPXXPKXXGGGGGXXXG 597
+ GGG R+ P GG P P GGGGG G
Sbjct: 249 RGGGGNQNRQQVPTNPMGGGGGYPQPPPQQGGGGGGAGG 287
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXXXXX 789
PPPPP G PP PPP P PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 790 XPP 798
PP
Sbjct: 773 PPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXXXXX 789
PPPPP G PP PPP P PP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 790 XPP 798
PP
Sbjct: 773 PPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXPXXXXXXXXX 789
PPPPP G PP PPP P PP P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 790 XPP 798
PP
Sbjct: 356 PPP 358
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 446 PGGDPGPKXLXIGGGCNPPXXPXXQKTPNPGFP 544
PG P P GGG PP P TP+ G P
Sbjct: 793 PGMRPPPGAPGGGGGMYPPLIPTRVPTPSNGAP 825
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 8 SNYRSHYREFLKIFGVTQ*CLSKQNMASNGKLALLSV 118
+N + Y + +I+G T+ + K + NGKLAL +V
Sbjct: 232 ANMVTSYLDLSQIYGSTEGIVKKMRLHKNGKLALRAV 268
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 446 PGGDPGPKXLXIGGGCNPPXXPXXQKTPNPGFP 544
PG P P GGG PP P TP+ G P
Sbjct: 793 PGMRPPPGAPGGGGGMYPPLIPTRVPTPSNGAP 825
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +1
Query: 610 PPPPPXXLGXXGXKIXPPXGXSPXXFRXKNPPPXXXQXFPXXKXFPPGXXP 762
PPPPP + PP P + PPP P P P
Sbjct: 70 PPPPPPLISILQQAPPPPPPPPPPTLKAPPPPPILGLKTPSKSLKTPTPRP 120
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +3
Query: 543 PXXWXPXPXXXXXFXPXXXPXXPPXPXXXFGXXXXKNXPPXGGXXLXFSXKKPPPXFXAX 722
P + P P P P P P F P GG PPP F A
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG------IPPPPPMFGAP 114
Query: 723 XPP 731
PP
Sbjct: 115 PPP 117
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 619 GXGGXXGXXXGXKXXXXXGXGYQXXGEPRVGGFLGXGXPXXVTPPP 482
G GG G G G GY G GG G G P PPP
Sbjct: 30 GCGGGGGCGGGG--GCGGGCGYGGGGGCGYGGGYGCGIPPPPPPPP 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,960
Number of Sequences: 27780
Number of extensions: 309057
Number of successful extensions: 911
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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