Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N18
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 189 3e-48
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 186 3e-47
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 32 0.69
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.4
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.4
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.5
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.5
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 28 8.5
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 189 bits (460), Expect = 3e-48
Identities = 96/175 (54%), Positives = 119/175 (68%)
Frame = +3
Query: 102 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 281
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 282 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 461
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 462 REPRLLIVLDPGTRPSTHY*SFICQPFL*LLCATQNSPLRFVDXAIPCNTKSSHS 626
EPRLLI+ DP T S + C T +SP+R+VD IP N K +S
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT-DSPMRYVDIGIPANNKGRNS 174
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 186 bits (452), Expect = 3e-47
Identities = 93/164 (56%), Positives = 113/164 (68%)
Frame = +3
Query: 135 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 314
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 315 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 494
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 495 GTRPSTHY*SFICQPFL*LLCATQNSPLRFVDXAIPCNTKSSHS 626
T S + C T +SP+R+VD IP N K S
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDT-DSPMRYVDIGIPANNKGKQS 174
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 31.9 bits (69), Expect = 0.69
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 747 GXTKXQPTNNXQGGWSRGXATPXKPSAXSTVPTTHPHQTNRSGXTWCC 604
G T + ++ G RG + PS ++ P+T P T RSG W C
Sbjct: 102 GGTSARGSSTPGGRSGRGTSPARAPS--TSAPSTSPTATTRSGVAWIC 147
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 202 TFSAPRWVVAASILVTSSSLRASTSNP 122
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 380 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 487
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 384 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 229
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 209 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 316
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 1 TXFNYHLTIGNSLRFIWFAFPPPSG 75
T + Y + IG ++R WF PP SG
Sbjct: 129 TKYYYAVGIGQTVRKFWFRTPPKSG 153
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 155 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 334
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 335 VRHLITALRSACCTEVCR 388
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,734,200
Number of Sequences: 37544
Number of extensions: 633125
Number of successful extensions: 1327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -