Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N17
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   2.6  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   7.9  

>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 172 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 306
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 419 DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDAPVSGGVMGAQ 571
           +G+    +KG +++D      P+  ++   +A +KG+ F  + VSGG  GA+
Sbjct: 89  EGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGSGVSGGEEGAR 139


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 161 DGRIVLTPTRMWLSSASETWEDSWLRTWLK 250
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,283
Number of Sequences: 5004
Number of extensions: 71573
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)