Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N17
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0663 - 30991390-30992340 48 1e-05
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 46 3e-05
05_07_0134 - 27911920-27912762 43 3e-04
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 42 8e-04
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 36 0.031
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 0.17
12_01_0849 + 7948693-7948996,7949829-7950610 31 1.6
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 3.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 29 4.7
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 8.3
>01_06_0663 - 30991390-30992340
Length = 316
Score = 48.0 bits (109), Expect = 1e-05
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 422 GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLA 586
G +A G LL+D +T DP + +I A K DAPVSGG GA++ATL+
Sbjct: 99 GALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPVSGGDRGARSATLS 153
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 46.4 bits (105), Expect = 3e-05
Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 11/221 (4%)
Frame = +1
Query: 229 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 408
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 409 LGQRWRC--GSCEKR---IASDRFEYDRSECSQTDLPYSLRERAGIHRCTCIWRSHGCSE 573
G+ G C I S + S D+ + + + S
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSG 120
Query: 574 RYPGLHGPE------GRKENFERSLXLLXVMGAKQFHCGQIGSXQVAXLTNNMLXGITGM 735
P + G +E + + LL MG K +CG G+ VA + NNM I+ +
Sbjct: 121 GVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKICNNMAMAISML 180
Query: 736 ATAXCMNMGIXNGTRTEXSVGRAEXXSXRSWSTEVSVXXPG 858
+ +G G + S R WS++ PG
Sbjct: 181 GVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPG 221
Score = 31.5 bits (68), Expect = 0.89
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Frame = +2
Query: 413 GKDGVVAHAK-KGS-LLIDSSTIDPNVPKQIFP----IALEKGLGFT------DAPVSGG 556
G++G++A+ G L IDSST+DP ++I L++ + DAPVSGG
Sbjct: 62 GRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSGG 121
Query: 557 VMGAQNATLAFM 592
V A+ L FM
Sbjct: 122 VPAAEAGKLTFM 133
>05_07_0134 - 27911920-27912762
Length = 280
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 422 GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFM 592
GV+A + G +L+D ++ P++ +++ A G D+PVSGG +GA++ LA +
Sbjct: 66 GVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALALL 122
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +1
Query: 133 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDAL 294
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTL 359
Score = 34.7 bits (76), Expect = 0.096
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 410 WGKDGVVAHAKKGSLLIDSSTIDPN-VPKQIFPIALE-KGLGFTDAPVSGGVMGAQNATL 583
+G G V+ G+ +I SST+ P V K + E + + DAPVSGGV A TL
Sbjct: 398 YGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTL 457
Query: 584 AFMGRKVVKKTS 619
+K+V S
Sbjct: 458 TTNMQKLVHDCS 469
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 36.3 bits (80), Expect = 0.031
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 52 SLLCARAHGRTLN*EKNKFKMAARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFM 231
SLLCARA AR + S C +++ + V FLGLG MG M
Sbjct: 8 SLLCARAAAAAPTLRLRGGGRGARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPM 65
Query: 232 AANLVKKGFTVRGYDPSKD----ALNAAAKNGVTPAN 330
A+NL+ G V ++ ++ L+ AK +PA+
Sbjct: 66 ASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPAD 102
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 193 VAFLGLGNMGGFMAANLVKKGFTV 264
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 469 TRIDQKRSFFRMSHNAIFAPGTRRARLCCWSIWKRPRRLHQRLQQWSW 326
T + ++RS A P RR LCC W RP +H R QQW +
Sbjct: 132 TALPERRSAVPAPPPASQPPPLRRPALCC--PW-RPLEVHPRRQQWRY 176
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 229 MAANLVKKGFTVRGYDPSKDALN 297
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 628 GTFRSFLYDLPAHEGQGSVLSTHDSSRY 545
G R F+YD + +G VL+T DSSRY
Sbjct: 340 GVQRWFIYDNNSDDGIEEVLNTMDSSRY 367
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 193 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 321
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,471,729
Number of Sequences: 37544
Number of extensions: 538404
Number of successful extensions: 1460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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