Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N13
(1040 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.088
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.27
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.62
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 28 1.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.1 bits (87), Expect = 0.001
Identities = 27/82 (32%), Positives = 27/82 (32%)
Frame = -3
Query: 870 GGGGXXXGXXGAPPPPXXGGGXGXXKXXXXXXRXXXXXXXGGGXXGGGFWGXXGGXXGGG 691
G GG G G PP P GG G G G GG G GG G G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 690 GPXXKKXKXXPXFXXGGGGGGG 625
G F G GG GG
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHGG 270
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/78 (35%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Frame = -3
Query: 909 GGGXGXPPPRXXLGGGGXXXGXXGAPPPPXXG--GGXGXXKXXXXXXRXXXXXXXGG-GX 739
GGG G PPP GG G G G GG G + GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 738 XGGGFWGXXGGXXGGGGP 685
GGG G GG G GGP
Sbjct: 254 FGGGPGGFGGGPGGHGGP 271
Score = 29.9 bits (64), Expect = 0.62
Identities = 23/77 (29%), Positives = 23/77 (29%)
Frame = -2
Query: 919 FXXGGGGGXPPPXXXFGGGGXXXXXXGGXPPPXXGGGXGXXKXXXXXPXXXXXXXXXGGX 740
F GGG PP G GG G GG G P G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 739 XGGGFLGXGGXXXGGRG 689
GGF G G GG G
Sbjct: 250 GLGGFGGGPGGFGGGPG 266
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -2
Query: 871 GGGGXXXXXXGGXPPPXXGGGXGXXKXXXXXPXXXXXXXXXGGXXGGGFLGXGGXXXGGR 692
GGG G PPP GG G GG GGF G G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP--GGFEGGPGGFGGGP 244
Query: 691 G 689
G
Sbjct: 245 G 245
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.088
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 686 GPPPPXXPPXXPQKPPPXXPPP 751
GPPPP PP PP PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 689 PPPPXXPPXXPQKPPPXXPPPXXXXXXXRXXXXXXFXXPXPPPXXGGGGAPXXP 850
PPPP P P PPP P PPP G G P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGP--------PPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +2
Query: 686 GPPPPXXPP--XXPQKPPPXXPPP 751
G PPP PP PPP PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 862 PPPQXXXXGGGPXPPP 909
PPP G GP PPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 625 PPPPPPPXXKXXXXFXFFXXGPPSPP 702
PPPPPPP ++ P + P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.27
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 689 PPPPXXPPXXPQKPPPXXPPP 751
PPPP P P PP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.35
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +2
Query: 689 PPPPXXPP--XXPQKPPPXXPP 748
PPPP PP P +PPP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.62
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 689 PPPPXXPPXXPQKPPPXXPPP 751
PPPP PP P PP PPP
Sbjct: 1715 PPPPSAPPM-PAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Frame = +2
Query: 689 PPPPXXPPXXPQKPP-PXXPP 748
PPPP P P PP P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 343 NWKVFWDQNPPNLKNARWKKK 405
NWK +W + P +KN + KKK
Sbjct: 40 NWKSYWKSHYPFVKNDKGKKK 60
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 689 PPPPXXPPXXPQKPPPXXPP 748
P PP PP P PP PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPP 437
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +2
Query: 692 PPPXXPPXXPQKPPPXXPPPXXXXXXXRXXXXXXFXXPXPPPXXGGGGAPXXP 850
P P P PPP P P PPP G AP P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = -3
Query: 747 GGXXGG--GFWGXXGGXXGGGGPXXKKXKXXPXFXXGGGGG 631
GG GG GF G GG GGG + + GG GG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 373 VGFGPKKPSNSKMVIPLIPXGSWESPNLXPL 281
V F PKK +MV+ P + PN+ PL
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = -3
Query: 840 GAPPPPXXGGGXGXXKXXXXXXRXXXXXXXGGGXXGGGFWGXXGGXXGG 694
GA P GG G + R GG GG G GG GG
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,290
Number of Sequences: 5004
Number of extensions: 48253
Number of successful extensions: 344
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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