Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N12
         (1420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -2

Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP--XLXXSFPXXXGPP 13
           P  PP     P     +P P  PPP P  G P PP P   +  + P    PP
Sbjct: 732 PPPPPPAVIVPTPAP-APIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -2

Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
           P       P P   P     P      P P  PPP      P PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = -2

Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGP-PXPXLXXSFPXXXGP 16
           P P  P      P   S  P P  PPP P    P P   P +  S P    P
Sbjct: 128 PAPPTPQSELRPPT--SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -2

Query: 162  PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
            P  PP     P   S  P P  PP  P    P    P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,066
Number of Sequences: 5004
Number of extensions: 13419
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 788909666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)