Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_N12
(1420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 35 0.16
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 33 0.37
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.37
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.49
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.49
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.49
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 33 0.65
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 33 0.65
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 32 1.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 32 1.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.5
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 31 2.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 2.6
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 2.6
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 31 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 2.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 2.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 31 2.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 2.6
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 30 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.5
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 6.0
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 6.0
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 8.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 8.0
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 8.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 8.0
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 8.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 8.0
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 8.0
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 8.0
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 34.7 bits (76), Expect = 0.16
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P PP P S +P P PPP G P PP P
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 33.5 bits (73), Expect = 0.37
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 87 SXGGXXGXGKGXXXGGGXXGXGGXXGXGXXXPXXXXRXXXXXXXXXGGXXXXGXGGXXG 263
S GG G G G GGG G GG G G G G GG G
Sbjct: 785 SSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAG 843
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.37
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P S P P PP P R PGPP P P GPP
Sbjct: 227 PSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRP-PGPPGPP 275
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.49
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPX---SPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P + SP P SPPP P G P PP P G P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.49
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPX---SPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P + SP P SPPP P G P PP P G P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.49
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPX---SPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P + SP P SPPP P G P PP P G P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 32.7 bits (71), Expect = 0.65
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPX--RGXPGPPXPXLXXSFPXXXGPP 13
P P P P L P S PP P G PGPP P P GPP
Sbjct: 217 PGPPGPRGPKGPPGSNGL-PSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPP 269
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 32.7 bits (71), Expect = 0.65
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPX--RGXPGPPXPXLXXSFPXXXGPP 13
P P P P L P S PP P G PGPP P P GPP
Sbjct: 217 PGPPGPRGPKGPPGSNGL-PSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPP 269
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGX--PGPPXPXLXXSFPXXXG 19
P + P PP P Q P P PPP RG P PP P P
Sbjct: 694 PPPGQPYGPPGGYPPQQQRPPYQAQ--PYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQM 751
Query: 18 PP 13
PP
Sbjct: 752 PP 753
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGX--PGPPXPXLXXSFPXXXG 19
P + P PP P Q P P PPP RG P PP P P
Sbjct: 694 PPPGQPYGPPGGYPPQQQRPPYQAQ--PYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQM 751
Query: 18 PP 13
PP
Sbjct: 752 PP 753
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P P PP P + P P PPP P P PP P
Sbjct: 47 PPPICPPQFCPPPP---MCPPPPPPPPPPMCPPPPPPMP 82
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGP-PXP 52
P P PP P + + P P +P P P P P P P
Sbjct: 178 PPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAPEPVPAP 217
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 9 GXGAXXTWERXXXGGEXVXPXXPXKXSXGGXXGXGKGXXXGGGXXGXGGXXGXG 170
G G W GG G G G G GGG G GG G G
Sbjct: 65 GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGG 118
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P ++P P P P G PGPP P P G P
Sbjct: 129 PGRPPQQPCEP----ITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P L +P +G PGPP P G P
Sbjct: 156 PGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVP 207
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = -2
Query: 264 PPXPXRXXXXSXXPXXLXSRXXXXPXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPX 85
PP R S P P P PP P + SP P +PP
Sbjct: 127 PPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRT 186
Query: 84 PXRGXPGPP 58
P P PP
Sbjct: 187 PPSPIPPPP 195
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP Q + P P PG P P P GPP
Sbjct: 204 PGPKGPPGQPGADGQPGMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPPGPP 255
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP +S P PPP P G P PP P F PP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P P PP P P P PPP +G P PP P
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Frame = -2
Query: 153 PPXXXXXPXQXSLSPXPXSPPPXPXRG-----XPGPPXPXLXXSFPXXXGPP 13
PP P L P PPP P G GPP P P G P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 758
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP +S P PPP P G P PP P F PP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P P PP P P P PPP +G P PP P
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Frame = -2
Query: 153 PPXXXXXPXQXSLSPXPXSPPPXPXRG-----XPGPPXPXLXXSFPXXXGPP 13
PP P L P PPP P G GPP P P G P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 758
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFP 31
P P PP P Q P PPP P P PP P S P
Sbjct: 50 PMPVCPPPPPC-PAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P ++P P P P G PGPP P P G P
Sbjct: 129 PGRPPQQPCEP----ITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P PP P ++P P P P G PGPP P P G P
Sbjct: 129 PGRPPQQPCEP----ITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P L +P +G PGPP P G P
Sbjct: 156 PGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVP 207
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP +S P PPP P G P PP P F PP
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPP 370
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 192 PXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P P PP P P P PPP +G P PP P
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Frame = -2
Query: 153 PPXXXXXPXQXSLSPXPXSPPPXPXRG-----XPGPPXPXLXXSFPXXXGPP 13
PP P L P PPP P G GPP P P G P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGP 341
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPX-RGXPGPPXPXLXXSFPXXXGPP 13
P P PP P S +P P PP P G PG P P G P
Sbjct: 210 PGPQGPPGAPGQPGSGS-TPGPAGPPGPPGPNGQPGHPGQDGQPGAPGNDGAP 261
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSP-XPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
+ P P PP P +P PPP P G PP P P G P
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P P P ++P P PP P PP P P G P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 317
Score = 29.5 bits (63), Expect = 6.0
Identities = 22/85 (25%), Positives = 24/85 (28%)
Frame = -2
Query: 267 RPPXPXRXXXXSXXPXXLXSRXXXXPXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPP 88
RPP P P R P P PP P + P P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM---PPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 87 XPXRGXPGPPXPXLXXSFPXXXGPP 13
P G P PP P + P PP
Sbjct: 343 YPG-GMPPPPPPRYPSAGPGMYPPP 366
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSP-XPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
+ P P PP P +P PPP P G PP P P G P
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P P P ++P P PP P PP P P G P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMP 327
Score = 29.5 bits (63), Expect = 6.0
Identities = 22/85 (25%), Positives = 24/85 (28%)
Frame = -2
Query: 267 RPPXPXRXXXXSXXPXXLXSRXXXXPXXXXXFXPXPXXPPXXXXXPXQXSLSPXPXSPPP 88
RPP P P R P P PP P + P P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM---PPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 87 XPXRGXPGPPXPXLXXSFPXXXGPP 13
P G P PP P + P PP
Sbjct: 353 YPG-GMPPPPPPRYPSAGPGMYPPP 376
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 6.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 215 FDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 272
Score = 29.5 bits (63), Expect = 6.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 305 FDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 362
Score = 29.5 bits (63), Expect = 6.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 365 FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 422
Score = 29.5 bits (63), Expect = 6.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 455 FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 512
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 380 FDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPP 437
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 395 FDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPP 452
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 410 FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPP 467
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = -2
Query: 174 FXPXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXP---GPPXPXLXXSFPXXXGPP 13
F P P P S +P PP P G P GPP P P GPP
Sbjct: 425 FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPP 482
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P PP P ++P P P P G PGPP P
Sbjct: 134 PGRPPQQPCEP----ITPPPCKPCPQGPAGPPGPPGP 166
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPP-PXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P + +P P PP P G PG P P G P
Sbjct: 212 PGPQGPPGAPGQPGSGN-APGPAGPPGPAGPNGQPGHPGQDGQPGAPGNDGTP 263
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPX-PXSPPPXPX--RGXPGPPXPXLXXSFPXXXGPP 13
P P P + ++P P +PPP +G PGPP P P G P
Sbjct: 119 PGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 173
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 111 PXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P G GPP P P GPP
Sbjct: 229 PGPPGPPGAP--GNDGPPGPPGPKGAPGPDGPP 259
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P PP P ++P P P P G PGPP P
Sbjct: 129 PGRPPQQPCDP----ITPPPCQPCPQGPPGPPGPPGP 161
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P PP P ++P P P P G PGPP P
Sbjct: 96 PGHPPQQPCDP----ITPPPCQPCPQGPPGPPGPPGP 128
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXP 52
P PP P ++P P P P G PGPP P
Sbjct: 129 PGRPPQQPCDP----ITPPPCQPCPQGPPGPPGPPGP 161
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.1 bits (62), Expect = 8.0
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPX-PXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P P + SP P +PPP P PGPP P GPP
Sbjct: 118 PGRPGAPGAPGHPGKPPQSPCEPLTPPPCPA-CPPGPPGAPGAPGKPGSEGPP 169
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPX-PXSPPPXPX--RGXPGPPXPXLXXSFPXXXGPP 13
P P P + ++P P +PPP +G PGPP P P G P
Sbjct: 114 PGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 168
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 111 PXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P G GPP P P GPP
Sbjct: 224 PGPPGPPGAP--GNDGPPGPPGPKGAPGPDGPP 254
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGP 61
P P PP P + +P P PPP P G GP
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPP--PPPPPPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGP 61
P P PP P + +P P PPP P G GP
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPP--PPPPPPSGAGGP 489
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXR-GXPGPPXPXLXXSFPXXXGPP 13
P PP P P P P P G PG P P GPP
Sbjct: 143 PTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPP 193
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPX-PXSPPPXPX--RGXPGPPXPXLXXSFPXXXGPP 13
P P P + ++P P +PPP +G PGPP P P G P
Sbjct: 114 PGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 168
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 111 PXPXSPPPXPXRGXPGPPXPXLXXSFPXXXGPP 13
P P PP P G GPP P P GPP
Sbjct: 224 PGPPGPPGAP--GNDGPPGPPGPKGAPGPDGPP 254
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 168 PXPXXPPXXXXXPXQXSLSPXPXSPPPXPXRGXPGPPXPXLXXSFP 31
P P PP Q + P P PPP P P PP P L P
Sbjct: 67 PPPPPPPPPLISILQQA--PPPPPPPPPPTLKAP-PPPPILGLKTP 109
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Frame = -2
Query: 162 PXXPPXXXXXPXQXSLSPXPXSPPPXPXR-GXPGPPXPXLXXSFPXXXGPP 13
P PP P P P P P G PG P P GPP
Sbjct: 143 PTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPP 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,640
Number of Sequences: 27780
Number of extensions: 163374
Number of successful extensions: 1677
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4037791064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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