Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N08
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.72 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 594  PPPPPPPXXGG 626
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 579  PXXGXPPPPPPP 614
            P  G P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 570 PPPPXXGXPPPPPPPXXG 623
           PP P    PPPPPP   G
Sbjct: 338 PPKPA---PPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 594 PPPPPPPXXGG 626
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = +3

Query: 558 PXRAPPPPXXGXPPPP---PPP 614
           P ++P  P  G PP P   PPP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 558 PXRAPPPPXXGXPPPPPPP 614
           P R  PP     PPP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.144    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,398
Number of Sequences: 438
Number of extensions: 5337
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)