Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N06
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 139 LILKVYISCFFFVDKYTTFGLLWIHQQYPQFK 44
           LI K Y+  +FF+D  ++  L +I   + QF+
Sbjct: 159 LIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 139 LILKVYISCFFFVDKYTTFGLLWIHQQYPQFK 44
           LI K Y+  +FF+D  ++  L +I   + QF+
Sbjct: 159 LIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 139 LILKVYISCFFFVDKYTTFGLLWIHQQYPQFK 44
           LI K Y+  +FF+D  ++  L +I   + QF+
Sbjct: 159 LIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 535 TNSDIANVLLKLHYKGIKI 591
           T SD+ N++   H KG+KI
Sbjct: 98  TISDLDNLVSAAHEKGLKI 116


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 534 HQL*YCECVTKTTLQRY*NPHYHRCRHGILYRFKFEKN 647
           H L   + +T TTL      HY   +  ++  F+ EK+
Sbjct: 27  HILSKYQLITSTTLNWLPRTHYDHLKEIVIGGFEIEKS 64


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 535 TNSDIANVLLKLHYKGIKI 591
           T SD+ N++   H KG+KI
Sbjct: 98  TISDLDNLVSAAHEKGLKI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,631
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)