Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N05
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    32   0.48 
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   7.8  

>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 23/92 (25%), Positives = 25/92 (27%)
 Frame = -1

Query: 888 GGGGVFXXXXKXXPXPPPXGRXXXXXKXXGGGXXXXXGXKRGXXKXXGAPXXFXXXXGFX 709
           GG G         P  P  G         GGG     G   G     GA        G+ 
Sbjct: 302 GGPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYS 361

Query: 708 GXXXGGGGXPPXXXFWXXGGXXTPXKXGXPGP 613
           G   GGGG       +  GG         P P
Sbjct: 362 GGGGGGGGGAAAGGGYNAGGGGGGAPQAAPAP 393


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 384 YILKLTSRLNNTSIYGSRFKDHFPIALAEPRTSIAGPALTMP 259
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,652
Number of Sequences: 27780
Number of extensions: 276730
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)