Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N04
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    36   0.006
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    29   0.88 
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   8.2  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 192 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 371
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 372 DVIVRP 389
           DV VRP
Sbjct: 665 DVYVRP 670


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 451 YFCCIFVLAAKQYPCFSISLFGLTITSFL*YFF 353
           Y CC  +  + QY  F ISLF L +   L + F
Sbjct: 72  YLCCGRLQMSSQYKAFLISLFALILPGVLFFIF 104


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 247 EYVDCWASADDRIANSLTHTFKLFKKVPSGSTAHNHYANDGDKY---YFCKIHFRNDLWA 77
           E V C  ++++++    +H     K    G+T   H+    D Y   YF K  F  ++  
Sbjct: 191 EIVFCAIASNEQVRGYGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGFTKEITL 250

Query: 76  LRSLSIGMXKN 44
            +S+ +G  K+
Sbjct: 251 DKSIWVGYIKD 261


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 824 PXXPXPPPXXPXPXPPXXPP 883
           P  P PPP  P   PP  PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPP 25


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 160 GSTAHNH-YANDGDKYYFCKIHF 95
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 818 PXPXXPXPPPXXPXPXPPXXPP 883
           P P  P  PP  P   PP  PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPP 437


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 653 EIIRHLQQGNK*SVSFVLXRSTLLTELT 570
           E++RHL +GN  +VS V  R+  +   T
Sbjct: 67  EVVRHLGEGNGGAVSLVKHRNIFMARKT 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,308
Number of Sequences: 5004
Number of extensions: 57307
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)