Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.29 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.1  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 701  IGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 561
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 267 RYHSLCQFYNIHHQ--CLVGSHLG 202
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 180 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 344
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 615 KMQHGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEEQRLTYF 752
           ++ H L   +   K    K ND F++ +  +N +  N+++ +L YF
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKL--NDDQSKLWYF 571


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -1

Query: 770 MANILSEVCQPLFFIIV----*NGVRIIGFVNEVVVFLVNAILSCGFRINEAML 621
           +AN+L E+C+  F  +V     + +  +G  +  +V+ V  I S GF  N +++
Sbjct: 721 VANVLHEICEKRFNSVVSISRFSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIV 774


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 125 YCTAERDGYKPSQNQDRLHGFQPRSK-L*ILRIPYSE 18
           +C+ E   YK S ++D     QP S+   IL++PY++
Sbjct: 198 WCSLELSYYKSSPSKDFSSASQPNSEGFSILKLPYNK 234


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 192 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 284
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,478
Number of Sequences: 5004
Number of extensions: 66538
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)