Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N01
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.020
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.33 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -1

Query: 946 PAPXRPXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
           P P      PP PPPP     A A PP  PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPG--VAGAGPPPPPPPP 782



 Score = 34.7 bits (76), Expect = 0.027
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 940 PXRPXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
           P  P    P PPPP         PP  PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.1 bits (72), Expect = 0.082
 Identities = 20/58 (34%), Positives = 21/58 (36%)
 Frame = -3

Query: 290 PPXPPPGXXLXXPPFGXXSXPFPXXXGGXPPXXLXPXPGWGXGXPXXXXXPPXPXPXP 117
           PP PPP   +  P       P P    G PP    P PG     P     PP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGP-----PPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = -3

Query: 287 PXPPPGXXLXXPPFGXXSXPFPXXXGGXPPXXLXPXPGWGXGXPXXXXXPPXPXPXP 117
           P PPP   +  PP      P P   G  PP    P P    G        P   P P
Sbjct: 750 PVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 946 PAPXRPXXAP-PXPPPPXSXXCAXAXPPSXPPPP 848
           PA   P  AP P P PP +       PP  PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGG--PPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 931  PXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
            P   P   PPP S     A PPS PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 943 APXRPXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
           AP  P  AP  PP P     A   PP+ P PP
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 29.9 bits (64), Expect = 0.76
 Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
 Frame = -1

Query: 946 PAPXRPXXAPPXPPPPXSXXCAXAXPPSXPP--PPXXXXXXXXXXXXXXXXXXXXPXXAS 773
           P P R   +    PPP S   A + PP+ PP  P                     P   S
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 772 XXFSSPPXXXAXXPSAPXXFFLGXAXXXPPXXXXXXXAXPPP 647
              S+PP   +  PSAP    +G A   PP       A P P
Sbjct: 423 LPPSAPP---SLPPSAPPSLPMG-APAAPPLPPSAPIAPPLP 460



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 949 RPAPXRPXXAPPXPPP-PXSXXCAXAXPPSXPPPP 848
           RP    P  + P PPP P       + PP+ PP P
Sbjct: 240 RPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -1

Query: 919 PPXPPPPXSXXC-AXAXPP---SXPPPP 848
           PP PPPP S    +   PP   S PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 931 PXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
           P   PP PPPP         PPS PPPP
Sbjct: 5   PPGNPPPPPPPPGF-----EPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 931 PXXAPPXPPPPXSXXCAXAXPPSXPPPP 848
           P   PP PPPP         P   PPPP
Sbjct: 6   PGNPPPPPPPP-----GFEPPSQPPPPP 28


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 849 GGGGXEGGXAXAHXXEXG--GGGXGGAXXGRXGAG 947
           G GG  GG         G  GGG GGA  GR G G
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 849 GGGGXEGGXAXAHXXEXG-GGGXGGAXXGRXGAGR 950
           G GG  GG    +    G GGG GGA  G  G  R
Sbjct: 10  GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR 44



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 852 GGGXEGGXAXAHXXEXGG-GGXGGAXXGRXGA 944
           GGG  G          GG GG GGA  GR G+
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGS 60



 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +3

Query: 849 GGGGXEGGXAXAHXXEXGG-GGXGGAXXGRXGAGR 950
           G  G  GG         GG GG GG   G  G GR
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGR 40


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = -1

Query: 943 APXRPXXAPPXP---PPPXSXXCAXAXPPSXPPPP 848
           AP  P  APP P   PPP         PPS P  P
Sbjct: 157 APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -1

Query: 943 APXRPXXAPPXP-PPPXSXXCAXAXPPSXPPP 851
           AP RP   PP P   P     A   P S PPP
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -1

Query: 946 PAPXRPXXAPPXPPPPXSXXCAXAX-PPSXPPPP 848
           P P +P      PP   S   A    PP  PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -1

Query: 931 PXXAPPXPP-PPXSXXCAXAXPPSXPPPP 848
           P  APP P  PP S   A   P   PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = +1

Query: 124 GXGXGGXXXXXGXPXPHPG--KGXKXXGGXPPXXKGKGXDXXPKGGXXXXXPGGGXGG 291
           G G GG     G P P PG   G    GG      G G      GG     PGG  GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG-FEGGPGGFGGG 243


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
 Frame = -3

Query: 290  PPXPPPGXXLXXPPFGXXSXPFPXXXGGXPPXXLXPXPGWG-XGXPXXXXXPPXPXP 123
            PP P P      P     + P P    G PP    P P  G    P     PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP---VPKPAAGVPPVPPPSEAPPVPKP 1203


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 849 GGGGXEGGXAXAHXXEXGGGGXGGAXXGRXGAGR 950
           G GG  GG         GGG  GG   G  G  R
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 852 GGGXEGGXAXAHXXEXGGGGXGGAXXGRXGAGR 950
           GG   GG         GGG  GG+  G  G  R
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 910 PPPPXSXXCAXAXPPSXPPPP 848
           PPPP +   A A   + PPPP
Sbjct: 909 PPPPTASMTASAPAIASPPPP 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.141    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,119
Number of Sequences: 5004
Number of extensions: 27177
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)