Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_N01
         (1240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 169 VGGSXXPXXGXPPPPP 122
           +G S  P    PPPPP
Sbjct: 332 LGDSDTPPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 931 PXXAPPXPPPPXS 893
           P  APP PPP  S
Sbjct: 339 PKPAPPPPPPSSS 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 934  RPXXAPPXPPPPXS 893
            R    PP PPPP S
Sbjct: 1351 RQQQPPPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.304    0.141    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,966
Number of Sequences: 438
Number of extensions: 5723
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)