Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M20
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.58 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   9.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 611 PAAXXPSPGPXPXRXPPPPXGGXXPPXWRXRXPXXP 718
           P++  P P P P + P  P  G  P   +   P  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
 Frame = +2

Query: 590 GAXPXPXPAAXXPSPG--PXPXRXPPPPXGGXXPP 688
           G  P P  +   P  G  P P + PPP      PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = +3

Query: 207 PPXXPTXLXGPRAP----PXFPXXAPXPPXPPXPP 299
           P   P+    P+AP    P  P   P P  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 362 PPXXPXPXPPPXTPPPPXP 418
           P   P P  PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 365 PXXPXPXPPPXTPPPPXP 418
           P  P   PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 386 PPPXTPPPPXP 418
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 356 GXGGGGXGGXGGGXAXGGGGGXGG 285
           G G G   G GG    GG  G  G
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRTG 102


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -2

Query: 362 GXGXGGGGXGGXGGGXAXGGGGGXGGXXGGG 270
           G    GG   G  GG    G    GG  G G
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,424
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)