Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M17
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    33   0.24 
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    31   1.3  
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247...    29   5.1  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 310 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGX 474
           KNGGT     K        FYP  + K RA S  +    +  ++R  +  GTV ILLAG 
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87

Query: 475 HAXKKVVLVGILXSG 519
           +  K+VV +  L SG
Sbjct: 88  YMGKRVVFLKQLKSG 102


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 361 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGXHAXKKVVLVGILXSG 519
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAG    K+VV +  L SG
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125


>06_02_0303 +
           14022428-14022652,14023247-14024159,14024310-14024700,
           14024949-14025206,14025284-14025394,14025486-14025564,
           14025842-14026027
          Length = 720

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 528 KSRPAGQNSNKYNLLACMXTSEENANSSYLQVGSD 424
           +++PAG  SN+  L+     +EE ++SS  + GSD
Sbjct: 6   EAQPAGDKSNETELIGLQVIAEELSSSSSGEAGSD 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,928
Number of Sequences: 37544
Number of extensions: 414605
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)