Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M16
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       36   0.032
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    36   0.032
05_05_0373 - 24478361-24479383                                         28   8.5  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 189 KNITMRGNVPKTTKEKEEQYPVAP 260
           KNIT RG+VP+TT +K   YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 189 KNITMRGNVPKTTKEKEEQYPVAP 260
           KNIT RG+VP+TT +K   YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>05_05_0373 - 24478361-24479383
          Length = 340

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 283 DEESQG-AQGATGYCSSFSLVVLGTFPLIVMFLLAISLAIRILCL-GGHF 140
           DEE +G A GA G+  SFS+V   T  L V  LL+    + + C+ GG F
Sbjct: 219 DEEEEGFAGGARGFVGSFSVVYSFT-GLEVRGLLSKKKGVLLRCVDGGRF 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,297
Number of Sequences: 37544
Number of extensions: 390394
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)