Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_M15
(1174 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 37 0.024
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 37 0.024
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 37 0.024
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 36 0.055
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 35 0.13
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 33 0.52
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 32 0.68
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 32 0.68
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.2
Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical pr... 31 1.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 31 1.6
AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen stru... 31 1.6
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 31 1.6
AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : short... 31 1.6
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 31 2.1
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 3.6
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 30 3.6
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 30 3.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 30 3.6
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 30 3.6
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 30 3.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.8
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 4.8
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 4.8
Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 6.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 6.3
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 29 8.4
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 8.4
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 37.1 bits (82), Expect = 0.024
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +2
Query: 302 GPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG- 478
GP G PG K E LKEGP G G P I + P G + E G
Sbjct: 197 GPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGW 256
Query: 479 ---NHPIGKVNLALPKALVGGSGPNREPG 556
+ G+ P+ +GG GP EPG
Sbjct: 257 PGVSGESGEPGYPGPEGPMGGQGPPGEPG 285
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 37.1 bits (82), Expect = 0.024
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +2
Query: 302 GPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG- 478
GP G PG K E LKEGP G G P I + P G + E G
Sbjct: 234 GPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGW 293
Query: 479 ---NHPIGKVNLALPKALVGGSGPNREPG 556
+ G+ P+ +GG GP EPG
Sbjct: 294 PGVSGESGEPGYPGPEGPMGGQGPPGEPG 322
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 37.1 bits (82), Expect = 0.024
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +2
Query: 302 GPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG- 478
GP G PG K E LKEGP G G P I + P G + E G
Sbjct: 218 GPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGW 277
Query: 479 ---NHPIGKVNLALPKALVGGSGPNREPG 556
+ G+ P+ +GG GP EPG
Sbjct: 278 PGVSGESGEPGYPGPEGPMGGQGPPGEPG 306
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical
protein W07A12.5 protein.
Length = 278
Score = 35.9 bits (79), Expect = 0.055
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Frame = +2
Query: 236 PKGTLRREEKLGY--QTRPIPFNPGPNLNEPGGL-VPGSKKAFGEN*LKEGPKGQRGLPN 406
P+G L K G Q+ P P P + G + PG A G+ EGP G G+P
Sbjct: 151 PEGVLGPSGKKGKTGQSLPGPVGPPGPPGKDGSIGAPGPDGASGKILTMEGPPGLPGVPG 210
Query: 407 SIXKKXVRFKPNPWNSFGT--KEEPGNHPIGKVNLALP--KALVGGSGPNREPG 556
S+ + KP P G PG P +P +G GP G
Sbjct: 211 SVGLPGIPGKPGPSGPDGKIGATGPGGDPGKPGGNGIPGEPGPIGNQGPRGSDG 264
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 34.7 bits (76), Expect = 0.13
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Frame = +2
Query: 236 PKGTLRREEKLGYQTRPIPFNPGPNLNEPGGLVPGSKKAFGE--N*LKEGPKGQRGLPNS 409
P G + +LG RP P P EPG PG K G+ L P G G P
Sbjct: 159 PAGIEGKPGRLGEDNRPGPPGPPGVRGEPGS--PGEKGPTGDRGKVLNGAPPGPTGPPGK 216
Query: 410 IXKKXVRFKPNPWNSFGTKEEPG-NHPIGKVNLALPKALVGGSGPNREPG 556
+ + + G +PG +G A L G GP EPG
Sbjct: 217 VGPRGLSGGKGHDGKPGLGGQPGVRGAVGARGDAGNPGLPGPQGPKGEPG 266
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.52
Identities = 26/92 (28%), Positives = 34/92 (36%)
Frame = +2
Query: 281 RPIPFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFG 460
+P P P +PG +PG GE +GPKG P K P P G
Sbjct: 136 QPCPQGPPGPPGQPG--IPGDNGPPGE----QGPKGPDAAPGEPGPKGPIGPPGPPGQAG 189
Query: 461 TKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
EPG+ + + P G +G PG
Sbjct: 190 APGEPGSPAKSEPAVPGPPGPPGQAGQQGPPG 221
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 32.3 bits (70), Expect = 0.68
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
G G+ G P + + +P G K PG+ IG + P G GP PG
Sbjct: 171 GLPGRPGKPGRVGDAGPQGEPGEQGEPGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPG 230
Query: 557 KN 562
N
Sbjct: 231 SN 232
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +2
Query: 290 PFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKE 469
P PGP P G PGS +N GP G+ G P + P P+ G
Sbjct: 217 PGPPGPR--GPKG-PPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSG 273
Query: 470 EPGNH 484
EPG H
Sbjct: 274 EPGGH 278
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 32.3 bits (70), Expect = 0.68
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
G G+ G P + + +P G K PG+ IG + P G GP PG
Sbjct: 171 GLPGRPGKPGRVGDAGPQGEPGEQGEPGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPG 230
Query: 557 KN 562
N
Sbjct: 231 SN 232
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +2
Query: 290 PFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKE 469
P PGP P G PGS +N GP G+ G P + P P+ G
Sbjct: 217 PGPPGPR--GPKG-PPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSG 273
Query: 470 EPGNH 484
EPG H
Sbjct: 274 EPGGH 278
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 31.5 bits (68), Expect = 1.2
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +2
Query: 311 LNEPGGLVPGSKKAFGEN*L-KEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHP 487
+ EPG PG K E+ + + GPKG RG P GT G P
Sbjct: 219 IGEPGP--PGEKGRDAEHPIGRPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEG--P 274
Query: 488 IGKVNLALPKALVGGSGPNREPGKN 562
GK P G +GP+ PGK+
Sbjct: 275 SGKQGRQGPDGTQGETGPDGRPGKD 299
Score = 29.9 bits (64), Expect = 3.6
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 254 REEKLGYQTRPI-PFNPGPNLNEPGGL-VPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXV 427
+ E +G T P P P L PG +PG + G N ++G G G S +
Sbjct: 160 QRESVGCFTCPQGPVGPPGALGRPGPRGLPGPRGQNG-NPGRDGQPGHPGEQGSSGQIGK 218
Query: 428 RFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPGKN 562
+P P G K HPIG+ PK G GP G+N
Sbjct: 219 IGEPGPP---GEKGRDAEHPIGRPG---PKGPRGDQGPTGPAGQN 257
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 31.5 bits (68), Expect = 1.2
Identities = 28/91 (30%), Positives = 36/91 (39%)
Frame = +2
Query: 290 PFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKE 469
P PGPN PG + G K A G + G G G P + + K P G K
Sbjct: 177 PGAPGPN-GRPG--LRGMKGADG-GLGRTGHDGNPGHPGEMGAPGPQGKQGPDGRQGEKG 232
Query: 470 EPGNHPIGKVNLALPKALVGGSGPNREPGKN 562
G PIG+ + G GP + G+N
Sbjct: 233 ADGRKPIGRPGPKGQRGPQGEQGPVGDNGRN 263
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/63 (34%), Positives = 23/63 (36%)
Frame = +2
Query: 374 EGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREP 553
EGP G G P K P P G EPGN G P G +GP E
Sbjct: 142 EGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNK--GPAGPPGPGGKPGPAGPPGEN 199
Query: 554 GKN 562
G N
Sbjct: 200 GNN 202
>Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical
protein F56D5.1 protein.
Length = 359
Score = 31.1 bits (67), Expect = 1.6
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = +2
Query: 371 KEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNRE 550
K G G G P I + + G K PG+ I + P L G GP
Sbjct: 165 KSGKSGHPGQPGGIGASGAKGPTGTRGTPGMKGPPGDTIIAGEGIKGPPGLQGSQGPKGP 224
Query: 551 PGKN 562
PG +
Sbjct: 225 PGNS 228
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 31.1 bits (67), Expect = 1.6
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +2
Query: 335 PGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALP 514
PG+ GE+ +EG GQ+G+P K + P GT+ + G PIG + P
Sbjct: 175 PGNPGRIGEHG-REGYPGQQGIPGEPGKPGKLGEAGPNGRDGTRGQKG--PIGPKGDSGP 231
Query: 515 KALVGGSGPNREPGKN 562
G GP+ PG++
Sbjct: 232 P---GQKGPSGYPGRD 244
>AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen
structural gene, probablya critical component of the
embryonically derived outerlayer of the L1 cuticle (31.8
kD) (col-59) protein.
Length = 322
Score = 31.1 bits (67), Expect = 1.6
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Frame = +2
Query: 314 NEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG-NHPI 490
+EP + P + G +GP+G RG P R +P GT+ EPG P
Sbjct: 173 SEPCMICPPGAQGLGGAPGAKGPQGPRGSPGLSGVDGRRGEPGMSGPAGTQGEPGPQGPP 232
Query: 491 GK-------VNLALPKALVGGSGPNREPGK 559
GK +N+ P G GP G+
Sbjct: 233 GKKGDDGRVINVNGPPGAGGAPGPQGRKGE 262
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 31.1 bits (67), Expect = 1.6
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = +2
Query: 290 PFNPGPN-LNEPGGL-VPGSKKAFG-EN*LKEGPKGQRGL-------PNSIXKKXVRFKP 439
P PGPN NEP PG G + K GP G G PN + KP
Sbjct: 1305 PNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKP 1364
Query: 440 NPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPGKN 562
P G+ + P G N ++P++ GG GP+ P N
Sbjct: 1365 GPNGPNGSSDPNKPGPNGPSNPSVPESSTGG-GPSPGPSPN 1404
>AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 14 protein.
Length = 322
Score = 31.1 bits (67), Expect = 1.6
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Frame = +2
Query: 314 NEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG-NHPI 490
+EP + P + G +GP+G RG P R +P GT+ EPG P
Sbjct: 173 SEPCMICPPGAQGLGGAPGAKGPQGPRGSPGLSGVDGRRGEPGMSGPAGTQGEPGPQGPP 232
Query: 491 GK-------VNLALPKALVGGSGPNREPGK 559
GK +N+ P G GP G+
Sbjct: 233 GKKGDDGRVINVNGPPGAGGAPGPQGRKGE 262
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 287 IPFNPGPNLNEPGGLVPGSKKAFGEN*LKE-----GPKGQRGLPNSIXKKXVRFKPNPWN 451
+P PGP P GL GS ++GE+ +E GP G RG+ + + P P
Sbjct: 277 LPGPPGPP--GPPGL-HGSPGSYGESKEEEIAGPPGPPGVRGIQGGVGSRGAEGNPGPKG 333
Query: 452 SFGTKEEPGNHPI 490
G + + G+H I
Sbjct: 334 PPGLQGDIGSHGI 346
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.6
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Frame = +2
Query: 269 GYQTRPIPFNPGPNLNEP---GGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFK- 436
G +P P P N P GG P + G G G P S K R +
Sbjct: 145 GAPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRG 204
Query: 437 -PNPWNSFGTKEEPG--NHPIGKVNLALPKALVGGSGPNREPG 556
P P + G++ PG P G N P G +GPN +PG
Sbjct: 205 LPGPSGAPGSQGPPGAPGQP-GSGNAPGPAGPPGPAGPNGQPG 246
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 371 KEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPI-GKVNLALPKALVGGSGPNR 547
+ GP G RG P + K +P P G GN G A G GP
Sbjct: 196 RPGPAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNPGAPGNDGEAGKNGNAGRPGPPG 255
Query: 548 EPGKN 562
PGKN
Sbjct: 256 HPGKN 260
Score = 29.1 bits (62), Expect = 6.3
Identities = 20/62 (32%), Positives = 23/62 (37%)
Frame = +2
Query: 371 KEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNRE 550
+ GPKG GLP S + P G E G P G G +GP E
Sbjct: 148 RPGPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQG--PQGDAGRPGAAGRPGPAGPRGE 205
Query: 551 PG 556
PG
Sbjct: 206 PG 207
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 29.9 bits (64), Expect = 3.6
Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Frame = +2
Query: 266 LGYQTRPIPFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNP 445
LG P P PG PG K G N GP+G GL KK + P P
Sbjct: 187 LGQAPEPCIICPPGQTGPPG--FPGQK---GPN----GPRGSPGLQGQDGKKGEQGMPGP 237
Query: 446 WNSFGTKEEPG-NHPIGKVNLALPKALVGGSGPNREPG 556
G PG P G+ + + G +GP PG
Sbjct: 238 QGPTGRPGRPGPKGPKGEDGRVI--MVAGPAGPAGPPG 273
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 371 KEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPI-GKVNLALPKALVGGSGPNR 547
+ GP G RG P + K +P P G GN G A G GP
Sbjct: 190 RPGPAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNPGAPGNDGEAGKNGNAGRPGPPG 249
Query: 548 EPGKN 562
PGKN
Sbjct: 250 HPGKN 254
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
GPKG GLP S + P G E G P G G +GP EPG
Sbjct: 144 GPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQG--PQGDAGRPGAAGRPGPAGPRGEPG 201
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 29.9 bits (64), Expect = 3.6
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +2
Query: 311 LNEPGGLVPGSKKAFGEN*LK-EGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHP 487
+ EPG PG K E+ + GPKG RG P GT G P
Sbjct: 219 IGEPGP--PGEKGRDAEHPIGGPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEG--P 274
Query: 488 IGKVNLALPKALVGGSGPNREPGKN 562
GK P G +GP+ PGK+
Sbjct: 275 SGKQGRQGPDGTQGETGPDGRPGKD 299
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
GP G+ G+ S+ P G + EPG + +N PK VG G +PG
Sbjct: 166 GPNGESGVIGSVGAAGREGTPGKRGIGGEEGEPGLIVMKMMNTRGPKGSVGPRGLTGQPG 225
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 4.8
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Frame = +2
Query: 269 GYQTRPIPFNPGPNLNEP---GGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFK- 436
G +P P P N P GG P + G G G P S K R +
Sbjct: 145 GVPGQPGPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRG 204
Query: 437 -PNPWNSFGTKEEPG--NHPIGKVNLALPKALVGGSGPNREPG 556
P P + G + PG P G N P G +GPN +PG
Sbjct: 205 LPGPSGAPGPQGPPGAPGQP-GSGNAPGPAGPPGPAGPNGQPG 246
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 4.8
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Frame = +2
Query: 299 PGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPG 478
PGP PGG G N + GP G RG P + K +P P G + P
Sbjct: 174 PGPP-GGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGPPGPRG-EAGPA 231
Query: 479 NHP--IGKVNLALPKALVGGSGPNREPGKN 562
P G + G GP PGKN
Sbjct: 232 GQPGSPGNDGESGKPGNAGRPGPPGAPGKN 261
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 29.5 bits (63), Expect = 4.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 296 NPGPNL-NEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEE 472
NPG + +EP LVPG A GE GP+G G P + + +P P G +
Sbjct: 201 NPGQDAPSEP--LVPGEPGAPGE----AGPQGPPGQPGTPGQNGQPGQPGPKGPSGQPGQ 254
Query: 473 PGN 481
PG+
Sbjct: 255 PGS 257
>Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical
protein R09A8.4 protein.
Length = 152
Score = 29.1 bits (62), Expect = 6.3
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +2
Query: 305 PNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIXKKXVRFKPNPWNSFGTK----EE 472
P P GL PG++ GE +EG G +G P + K + G + E+
Sbjct: 18 PGQPGPQGL-PGNQGDQGEIG-REGSPGAQGAPGDMGMMGEAGKEGEKGAPGREGVRGEK 75
Query: 473 PGNHPIGKVNLALPKALVGGSGPNREPGK 559
+ P G L PK G SGP PG+
Sbjct: 76 GPSGPPGLPGLVGPKGFSGNSGPPGSPGE 104
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
GP G+ G P + P G PGN IG + +G GP PG
Sbjct: 182 GPSGRDGYPGEKGDRGDTGNAGPRGPPGEAGSPGNPGIGSIGPKGDPGDIGAMGPAGPPG 241
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +2
Query: 377 GPKGQRGLPNSIXKKXVRFKPNPWNSFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPG 556
GP G+ G P + P G PGN IG + +G GP PG
Sbjct: 182 GPSGRDGYPGEKGDRGDTGNAGPRGPPGEAGSPGNPGIGSIGPKGDPGDIGAMGPAGPPG 241
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 28.7 bits (61), Expect = 8.4
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +2
Query: 236 PKGTLRREEKLGYQTRPIPFNPGPNLNEPGGLVPGSKKAFGEN*LKEGPKGQRGLPNSIX 415
P+GT GY RP P PG PG G N G KGQ +
Sbjct: 175 PRGTGGSPGTDGYPGRPGEMGP------PGP--PGDDGKPGSN----GEKGQ-DVEQPTP 221
Query: 416 KKXVRFKPNPWNSFGTKEEPGNH-PIGKVNLALPKALVGGSGPNREPGK 559
+K R P G + + GN P+G P + G GP PG+
Sbjct: 222 RKGPRGPPGDSGPPGPEGDAGNDGPVGAAGAPGPDGINGFQGPGGPPGE 270
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.7 bits (61), Expect = 8.4
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Frame = +2
Query: 287 IPFNPGPNLNEPGGLVPGSKKAFGE-----N*LKEGPKGQRGLPNSIXKKXVRFKPNPWN 451
+P PGP+ + VPG K GE N GP G G P K
Sbjct: 190 LPGPPGPSGPQGAPGVPGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPG 249
Query: 452 SFGTKEEPGNHPIGKVNLALPKALVGGSGPNREPGK 559
G PG+ P K + LP GG+GP PG+
Sbjct: 250 KAGPPGLPGD-PGEKGSDGLP-GPHGGTGPRGPPGQ 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,600,296
Number of Sequences: 27780
Number of extensions: 546629
Number of successful extensions: 1145
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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