Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_M13
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 308 5e-84
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 302 3e-82
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 31 0.89
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 1.5
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 6.2
03_06_0610 + 35052455-35053429,35054936-35055511 29 6.2
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 308 bits (755), Expect = 5e-84
Identities = 149/187 (79%), Positives = 166/187 (88%), Gaps = 1/187 (0%)
Frame = +3
Query: 204 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 380
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 381 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 560
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 561 RRQAVDVSPSRRVNQAIWLLCTGAREAAFRNIXTIAECVADXLXNAAKGSSNSYAIKKKD 740
RRQAVD+SP RRVNQAI+LL TGARE+AFRNI TIAEC+AD L NAAKGSSNSYAIKKKD
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 189
Query: 741 XLERVAK 761
+ERVAK
Sbjct: 190 EIERVAK 196
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 302 bits (741), Expect = 3e-82
Identities = 146/186 (78%), Positives = 164/186 (88%), Gaps = 1/186 (0%)
Frame = +3
Query: 207 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 383
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 384 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 563
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 564 RQAVDVSPSRRVNQAIWLLCTGAREAAFRNIXTIAECVADXLXNAAKGSSNSYAIKKKDX 743
RQAVD+SP RRVNQAI+LL TGARE+AFRNI TIAEC+AD L NAAKGSSNSYAIKKKD
Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 191
Query: 744 LERVAK 761
+ERVAK
Sbjct: 192 IERVAK 197
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 649 LNAASRAPVHKSQIAWLTRREGETSTA*RRTVPARPILVESSRGPE 512
L+A+SR P + +I RR G + + RR+ P +P +R PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 147 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 326
+AGS+ V S + D+ E+K G + S S+ D +V E P S+ R
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635
Query: 327 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 422
+ +CP ++ + S N+G L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 139 T*PRQAAWLWKPCLYHKPPTF 201
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 257 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 90
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 89 *K 84
K
Sbjct: 476 AK 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,801,914
Number of Sequences: 37544
Number of extensions: 451982
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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