Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M12
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    23   3.7  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   4.8  

>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 23.0 bits (47), Expect(2) = 3.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 176 IAPWARAMQAKRTTNLAAMMYCRETEC 96
           +  WA  + A    N+  + +C  TEC
Sbjct: 623 VKEWADFVPALNKKNIVMIPWCNTTEC 649



 Score = 22.2 bits (45), Expect(2) = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 74  CNTEECVKXLKGSS 33
           CNT EC K +K +S
Sbjct: 644 CNTTECEKEIKKNS 657


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 360 SXAALGDANGKAKEALEQSRQNIERTAEE 446
           S A  G  NG+AKE  E+ R   ++T E+
Sbjct: 468 SSAKQGKGNGRAKETPEEKRARKKKTKED 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,423
Number of Sequences: 5004
Number of extensions: 37696
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)