Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M12
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    29   6.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.9  

>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 558 PSSVTSGIPARCSARRPCSFSRRAVA--FFSTFRVGPCGAPRPCARCSASTVP 406
           PS+  + +P  CSA   C+ S  + +    ST+R  PCG+P+ CA+  + + P
Sbjct: 121 PSNDAAWVP--CSACAGCAASSPSFSPTQSSTYRTVPCGSPQ-CAQVPSPSCP 170


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 474 STFRVGPCGAPRPCARCSASTVPKPPW 394
           +T+R  PC  P P  R  ++T  + PW
Sbjct: 20  ATYRRSPCTTPAPRMRSLSATTTRRPW 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,763
Number of Sequences: 37544
Number of extensions: 349707
Number of successful extensions: 1364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)