Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M11
         (1080 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.18 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect(2) = 0.18
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 891 APPPPPPXXXG 859
           APPPPPP   G
Sbjct: 342 APPPPPPSSSG 352



 Score = 22.2 bits (45), Expect(2) = 0.18
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 939 KXXPPPPPP 913
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 875 GGGGGAXPXXXXXGGGGGG 931
           G  GG+       GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 899  GGXXPPPPPP 870
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 887  PPPPPPXXXGG 855
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,794
Number of Sequences: 438
Number of extensions: 6610
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36150300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)