Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M09
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.38 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.44 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.44 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.77 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 553  PXPPPPPP 576
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 454  GXXXPPPPPP 425
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect(2) = 0.38
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 452  GXXPPPPPPP 423
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect(2) = 0.38
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 443  PPPPPPPXR 417
            P PPPPP R
Sbjct: 1857 PEPPPPPPR 1865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 550 PPXPPPPPPPXXPAXGGRPS 609
           PP P PPPPP  P+  G  S
Sbjct: 338 PPKPAPPPPP--PSSSGPDS 355



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 443 PPPPPPPXRG 414
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -1

Query: 578 GGGGGGGXGGXXGGGGGGXKKXXXRGRXAGGGGGXXVXWG 459
           GG G    GG   G  GG           GGGGG  +  G
Sbjct: 20  GGPGSSSAGGVVTGASGG--SIVVGANNGGGGGGLGIASG 57



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 443 PPPPPPPXRG 414
           P PPPPP RG
Sbjct: 374 PLPPPPPIRG 383


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.77
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 443  PPPPPPPXRG 414
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 442  PPPPPPP 422
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 559  PPPPPPP 579
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 559  PPPPPPP 579
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 550  PPXPPPPP 573
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 553  PXPPPPPP 576
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 442  PPPPPPPXGE 413
            PPPPPP  G+
Sbjct: 1357 PPPPPPSSGQ 1366



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 565  PPPPPXXPAXG 597
            PPPPP  P+ G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 464  WGGXGXXPPPPPP 426
            W      PPPPPP
Sbjct: 1350 WRQQQPPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 553 PXPPPPPPPXXPAXGGRPSLXPPXPXAXXXGXPP 654
           P P P   P  P  G  P+     P     G PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 550 PPXPPPPPPPXXPAXGGRPSLXP 618
           PP P   PPP  P  G  PS  P
Sbjct: 39  PPNPSQGPPPGGP-PGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,565
Number of Sequences: 438
Number of extensions: 5742
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)