Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_M08
         (878 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.59 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.78 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.78 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.2  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   4.2  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    23   4.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +3

Query: 528 HRLRPPDEHHKNRRSSQRWRNPTGL*RYQAVXPPGSSLVRSPVXEPWPLTGIPGPPFSPS 707
           H   PPD  H  + +      PT    +  V  P  + V SP    W LT  P PP+  S
Sbjct: 283 HVYNPPD--HIQQATPYSAPGPTYS-TWSTVQTP--TTVMSPTINCWSLTSSPPPPYQIS 337

Query: 708 GK 713
            +
Sbjct: 338 AQ 339


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 624 PPGSSL-VRSPVXEPWPLTGIPGPPFSPSG 710
           PPG+ L +  P  EP P    PGP   P+G
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPAG 168


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 624 PPGSSL-VRSPVXEPWPLTGIPGPPFSPSG 710
           PPG+ L +  P  EP P    PGP   P+G
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTG 168


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 151 KKCFICEICDAIALFVTIISCNKQVN 228
           K C +C+  + I  F+ II C  Q N
Sbjct: 522 KLCDVCDSVNRIFGFIIIIGCLIQFN 547


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 174 NFTNKAFFSLH 142
           NF NKAFF  H
Sbjct: 20  NFNNKAFFCFH 30


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 174 NFTNKAFFSLH 142
           NF NKAFF  H
Sbjct: 20  NFNNKAFFCFH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 648 SPVXEPWPLTGIPGPPFSP 704
           SP     PLT  PGPP  P
Sbjct: 109 SPSGNVPPLTPSPGPPSHP 127


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 388 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 498
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 590 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 624


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 388 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 498
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 482 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,968
Number of Sequences: 336
Number of extensions: 4018
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)